Lotus japonicus: Lj3g3v3033290.1
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Entry
Lj3g3v3033290.1 CDS
T04348
Symbol
Lj3g3v3033290.1
Name
(Kazusa) -
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lja
Lotus japonicus
Pathway
lja03030
DNA replication
lja03410
Base excision repair
lja03420
Nucleotide excision repair
lja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lj3g3v3033290.1 (Lj3g3v3033290.1)
03410 Base excision repair
Lj3g3v3033290.1 (Lj3g3v3033290.1)
03420 Nucleotide excision repair
Lj3g3v3033290.1 (Lj3g3v3033290.1)
03430 Mismatch repair
Lj3g3v3033290.1 (Lj3g3v3033290.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lja03032
]
Lj3g3v3033290.1 (Lj3g3v3033290.1)
03400 DNA repair and recombination proteins [BR:
lja03400
]
Lj3g3v3033290.1 (Lj3g3v3033290.1)
Enzymes [BR:
lja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Lj3g3v3033290.1 (Lj3g3v3033290.1)
6.5.1.6 DNA ligase (ATP or NAD+)
Lj3g3v3033290.1 (Lj3g3v3033290.1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Lj3g3v3033290.1 (Lj3g3v3033290.1)
DNA replication proteins [BR:
lja03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Lj3g3v3033290.1 (Lj3g3v3033290.1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Lj3g3v3033290.1 (Lj3g3v3033290.1)
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Lj3g3v3033290.1 (Lj3g3v3033290.1)
NER (nucleotide excision repair)
Other NER factors
Lj3g3v3033290.1 (Lj3g3v3033290.1)
MMR (mismatch excision repair)
Other MMR factors
Lj3g3v3033290.1 (Lj3g3v3033290.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
LinkDB
All DBs
AA seq
776 aa
AA seq
DB search
MIHFRPYLSPPFLSHHRITAVKLFSLPFLTLPRRAMSKPPSAFDALMSGARAAAAKKKPP
PPSAASPKKRKSPHSSPAPAPTLNPNNLKTPETVQPPRDSVETVQPSSEEAVETVLQPAK
KICNSSGSLIAELKELAPRLKKKPSEFDPSTVVCWEKGKPVPFLFLCLAFDMIDKESGRI
VITDIACNLLRTVIHATPEDLVPVVYFLANRIAPAHEGLELGIGDASIIKALAESCGRTE
SQIRKLNKDRGDLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDSQEKKKNH
IKSLLVAATDCEPIYLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPEIQSPLEE
AAKIVKQVYSVLPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVSEILNKF
QDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKTSVSSFVL
DCEVVAYDRAKQRILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILLQENLKTR
REHLYASFEEESGYFQFATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKR
SLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQSICKIGT
GFSEDVLIERSKGLQTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVYRAA
VGIVDSNKGISLRFPRLLRVRPDKDPEQATSSEQVAEMYNAQKHNQTDNQNDNEDD
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgatccatttccgtccttacctctctcccccattcttatctcatcatcgaatcaccgcc
gtcaagcttttctctcttccctttctcaccctccctcgccgcgccatgtccaaaccaccc
tccgccttcgacgccctaatgtccggcgcacgcgccgccgccgccaagaagaaaccacct
ccaccttccgccgcatcccccaagaaacgaaaatcccctcactcctccccagcccccgcc
cccaccctaaaccctaacaacctcaaaacccccgaaaccgttcaaccgcctagggattca
gttgaaaccgttcaaccgtcatcggaagaagccgttgaaactgtgcttcaaccggcgaag
aagatttgcaacagcagcgggtctttgatcgccgagttgaaggagctggccccgaggctc
aagaagaagccgtcggagttcgatccgagtactgtggtttgctgggagaagggaaaaccc
gtgccgttcctgttcttgtgcttggcgtttgacatgattgacaaggagtcagggaggatt
gtgatcacggacattgcgtgcaaccttctgagaacggtcatacacgctacgccggaggat
cttgtgccggtggtctatttccttgcgaataggattgctccggcgcatgaagggttggaa
ttgggaattggtgatgcttccattatcaaggcgctcgcggagtcttgtggaaggactgag
tcgcagattaggaagctgaataaggatagaggtgatttgggattggtcgccaaagagtgc
cgttcatctcagtcaatgatgcggaagcctgatgcattgactataaggaaggttttcacg
atctttcgcctcattgccaaggaatctggaaaagacagtcaagagaagaaaaagaatcat
ataaagtctcttcttgttgctgcaactgactgtgaacctatatatctaattcgtttgtta
cagacaaagttgcgaattggattagctgaacaaactctcttagcttcattagggcaggct
gcagtgtacactgaagaacattctaaaccacctcctgaaattcagtctcctctagaagag
gctgcaaaaatcgttaaacaagtctattctgttcttcctgactatgacaaagtactgtct
tcactgcttaaggatggtgtgtggaaacttccaaagacatgtaaatttactcttggtgtt
cctgtcgggcctatgctttccaaaccaaccaagggtgtatctgaaattctgaataaattc
caggatgtagagtttacctgtgaatacaaatacgacggagagcgtgctcagatacattac
atggagaatggctcagttgaagtttacagcagaaatgcagaatggaatactggaaagttt
cctgatgttgttgctgcagtttcaaggttaaagaaaacaagtgtatcatcatttgttctt
gattgtgaagttgttgcatatgaccgtgcaaaacaaagaatccttccttttcaggtgctt
agtactcgggctcgcaaaaatgtagctgtgagtgacataaaggttgatgtttgcatattt
gcctttgatttgttgtatcttaatggtcaaatacttcttcaggaaaacttgaaaactcgt
agagagcatctctatgcctcttttgaggaagaatctggatattttcagtttgcaacagca
ataacatcaaatgatgttgaggagatacagaagtttcttgacaaagccattggtgcaagt
tctgagggattaatcattaaaacattaaatgaagatgctacatatgaaccttccaagcgg
tcactcaactggctaaaactgaagaaagattatatggataatataggagactcactagat
ttagttcctattgctgcttttcacggtcgtgggaaacgtacaggagtctatggtgccttt
ctccttgcttgctatgacaacagtaatgaagaatttcaaagtatttgtaagattggaact
ggattctctgaagatgttcttatagagcgttctaaaggcctccagactaaagtcattccg
aagccaaaggcctactatcggtatgcagaaacaataaatcctgatgtttggtttgaagcc
agtgaggtgtgggaggtgaaggctgcagacctgactattagccccgtttatcgagctgca
gtgggtattgtagattcaaacaagggcatatctcttcgatttccacgcctacttcgagta
cggcctgacaaagatcctgagcaggccacatcgtctgagcaggttgctgaaatgtataat
gctcagaaacacaatcaaacggacaaccaaaatgacaatgaagatgattgaatg
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