Lotus japonicus: Lj5g3v0087430.1
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Entry
Lj5g3v0087430.1 CDS
T04348
Symbol
Lj5g3v0087430.1
Name
(Kazusa) -
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Lj5g3v0087430.1 (Lj5g3v0087430.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
Lj5g3v0087430.1 (Lj5g3v0087430.1)
03019 Messenger RNA biogenesis [BR:
lja03019
]
Lj5g3v0087430.1 (Lj5g3v0087430.1)
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Lj5g3v0087430.1 (Lj5g3v0087430.1)
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Lj5g3v0087430.1 (Lj5g3v0087430.1)
BRITE hierarchy
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Paralog
GFIT
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All DBs
AA seq
683 aa
AA seq
DB search
MGTGRTGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMILDARNQP
RQNINSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEVE
DNHHQSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHSD
GFVSTLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGDESPSRESSLRQQSPP
PVGKFHRSQLRDLQSGSFSSMTFQPSHKQQLGSSHTEVTAKTEKPHLSKVPLPRETEQPT
TTRFETAAGKGGKLSNMPITNRLPTSRSLDTGKLPSILGDRPSQSSGSSPAGLIPPVSAI
ASPPSLGRPKDNSSALPKIPPRRAAQPPRTSALPPASSNLKSAAVQASSSANNALNPIAN
LLNSLVAKGLISAETETTAKVPSEMLTRLEDQSDSITTSSSLPGASVSGSAVPVPSTKDE
VDDGAKTPISLSESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKF
QEQFDRHLEWHATREREHSGLIKASRWYLKSSDWVVGKVESLSENEFADSVDRYGKETDR
NQEDAMVLADENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGG
GPIIHARCLSENPVSSVLNMEQD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgggtactggcaggactggtggtagggtggccgagttaggaagtgacaaaagtgggtac
aacaaagctgctggtgctggtgttgcagggaccatatctgggcaaagaaatggtttgagt
atcaagaataactttttgaatactgaagcatccatgattttggatgcacgtaatcagcca
agacaaaacattaatagcctacagagaggcgtaatgtcaaatagctggaaacattctgag
gaagaggagttcatgtgggatgagatgaatgctggattgactggtcacgatgcagccagt
gtccctaacaacttgagcaaagattcttggacttctgatgatgagaatttggaggttgaa
gataatcaccaccaaagcagaaatccctttggggcaaatgttgatacagaaatgtccatt
gaatctcaagcaactgaaaggaaacaattacctgcatttcggcctcatccatcactatca
tggaaattgcaggagcagcactcaattgatgagttgaatcagaagccaggtcactcagat
ggatttgtgtcaactcttggtgccctacctaccaatactaattctgctgctactaggatg
gggaatcggtctttactgccaaaggcaacaattggcttagcaggaaacctgggacaactt
cattctgtgggagatgaatccccttcgagagagtcaagtttgcgacaacagtctccacca
ccagttgggaaattccatagatcacagctaagagacttgcagagtggttcattctcttca
atgacgtttcagccaagtcacaagcagcaactgggctcttcgcacactgaagttactgct
aagactgagaagccacacctgtctaaagttcctctgcctcgagaaacagagcaaccaacc
acaactcgttttgaaactgcagctgggaagggcggaaagttatccaacatgccaattact
aataggcttcctacttcaagaagcttggatacagggaagcttccatctatattaggagat
cggccttcccagtcaagtggttcttcccctgccggattaattcctccagtgtctgcaatt
gcatcacctccctcattaggtcgtcccaaagataattcctctgctctgccaaaaatacct
ccaagaagggctgcacagccaccaaggacatctgctctaccaccagcttcctctaatctc
aaaagtgctgcagtccaggcatcaagttctgccaataatgccttaaatccaattgcaaac
cttttaaactcattagttgcaaagggtttgatctctgcagaaaccgagacaacagctaag
gtgccatctgagatgctgactcgattggaagatcaaagtgacagcattaccaccagtagc
tctttgcctggtgcttcagtgtctggttctgcagtcccagtcccttctaccaaagatgaa
gtagacgatggtgcaaaaacacctatatccttatctgaatcaaccagcacagaaatcaga
aatttcattggctttgagtttaagcctgatgtaatccgagagttgcatccatctgtaatt
agtggattatttgatgattttccacatcattgcagcatttgtagccttaagcttaaattc
caagaacagttcgatagacacttggagtggcatgccacaagagaaagagaacacagtggt
ctaattaaggcatcgagatggtatctgaaatcaagtgactgggttgttggcaaggttgaa
agtctatctgaaaatgagttcgctgattctgtagatagatatggcaaggaaacagacaga
aatcaagaggatgcaatggttctagctgatgaaaaccaatgcttgtgcgtgttgtgtggt
gagctatttgaagagttttactgtcaggaaaatggtgagtggatgttcaaaggggctgtt
tatgtgcctaactctgatatcaatgatgatatgggaattagagatgcgagtacaggaggg
ggtcccatcattcatgcaagatgcttatcagagaacccagtttccagtgtcctgaacatg
gagcaggattaaagc
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