KEGG   Lentilactobacillus kefiri: DNL43_10535
Entry
DNL43_10535       CDS       T06710                                 
Name
(GenBank) DNA-formamidopyrimidine glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
lkf  Lentilactobacillus kefiri
Pathway
lkf03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:lkf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    DNL43_10535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lkf03400]
    DNL43_10535
Enzymes [BR:lkf01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     DNL43_10535
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     DNL43_10535
DNA repair and recombination proteins [BR:lkf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     DNL43_10535
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS Auto_anti-p27 zinc-ribbons_6 DZR NFACT_N Zn_Tnp_IS1595 TF_Zn_Ribbon zf-TFIIB OrfB_Zn_ribbon
Other DBs
NCBI-ProteinID: QGV25690
LinkDB
Position
complement(2183333..2184172)
AA seq 279 aa
MPELPEVETVRRGLTQLVEGSTIKTVDVLYAKMINLPPDDFKEALRGKRIEKIDRRGKYL
FIRLSGHLTIVSHLRMEGKYDVEPEGSPIDKHTHIIFHLTDGRQLRYNDTRKFGRMNLVD
TGTEMQVAGLKTIGPEPTEKDLTVEYMKRIFAKSRKVIKPFLLDQSNIAGLGNIYADEVL
WLSKINPKQPVNTISLAKIKVLRKNIIDELARAIAGHGTTVHSYSTAYGEAGQFQNHLNV
YGREGEPCPRCGTKIVKIKLAQRGTHFCPKCQRLRGVKK
NT seq 840 nt   +upstreamnt  +downstreamnt
atgcctgaattacctgaagttgagactgtaagacgcgggctgactcaattagttgaggga
agtaccatcaaaacagttgacgttttatatgcaaaaatgattaatcttcctcctgatgat
tttaaagaagctcttcgtggcaaacgaattgaaaagattgatcgtcgggggaaatatctt
tttattcgcctgagtggtcatttgacgattgtgtcccatcttcggatggaagggaaatac
gatgttgaaccggaaggatcgcccattgataagcacacgcacattattttccacttaacg
gatgggcgtcagttaaggtataacgatacccgaaaatttgggcggatgaacttggttgat
actggaaccgagatgcaggttgccggtttgaaaaccattggaccggaaccaaccgaaaaa
gatttgacggtcgagtatatgaagcggattttcgcaaaaagccggaaagttatcaagccg
tttctgctggatcaaagcaacatcgccggtttgggaaacatttacgccgatgaggtctta
tggttgagtaaaattaaccccaaacagccggtcaatacaattagtctcgcaaagattaaa
gtcttacgaaagaacattattgacgaactggcaagagcaattgcaggccatggcacaacc
gttcattcatattcaactgcatacggcgaagctggacagtttcaaaatcacttaaatgtg
tatggcagagagggtgaaccctgcccacgatgtggaaccaaaatcgttaaaatcaagttg
gcccaaagaggcacgcacttttgcccgaagtgtcaacggttgcgtggtgttaagaaatga

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