Lentilactobacillus kefiri: DNL43_10535
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Entry
DNL43_10535 CDS
T06710
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lkf
Lentilactobacillus kefiri
Pathway
lkf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DNL43_10535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lkf03400
]
DNL43_10535
Enzymes [BR:
lkf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DNL43_10535
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DNL43_10535
DNA repair and recombination proteins [BR:
lkf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DNL43_10535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
zinc-ribbons_6
DZR
NFACT_N
Zn_Tnp_IS1595
TF_Zn_Ribbon
zf-TFIIB
OrfB_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
QGV25690
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Position
complement(2183333..2184172)
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AA seq
279 aa
AA seq
DB search
MPELPEVETVRRGLTQLVEGSTIKTVDVLYAKMINLPPDDFKEALRGKRIEKIDRRGKYL
FIRLSGHLTIVSHLRMEGKYDVEPEGSPIDKHTHIIFHLTDGRQLRYNDTRKFGRMNLVD
TGTEMQVAGLKTIGPEPTEKDLTVEYMKRIFAKSRKVIKPFLLDQSNIAGLGNIYADEVL
WLSKINPKQPVNTISLAKIKVLRKNIIDELARAIAGHGTTVHSYSTAYGEAGQFQNHLNV
YGREGEPCPRCGTKIVKIKLAQRGTHFCPKCQRLRGVKK
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgaagttgagactgtaagacgcgggctgactcaattagttgaggga
agtaccatcaaaacagttgacgttttatatgcaaaaatgattaatcttcctcctgatgat
tttaaagaagctcttcgtggcaaacgaattgaaaagattgatcgtcgggggaaatatctt
tttattcgcctgagtggtcatttgacgattgtgtcccatcttcggatggaagggaaatac
gatgttgaaccggaaggatcgcccattgataagcacacgcacattattttccacttaacg
gatgggcgtcagttaaggtataacgatacccgaaaatttgggcggatgaacttggttgat
actggaaccgagatgcaggttgccggtttgaaaaccattggaccggaaccaaccgaaaaa
gatttgacggtcgagtatatgaagcggattttcgcaaaaagccggaaagttatcaagccg
tttctgctggatcaaagcaacatcgccggtttgggaaacatttacgccgatgaggtctta
tggttgagtaaaattaaccccaaacagccggtcaatacaattagtctcgcaaagattaaa
gtcttacgaaagaacattattgacgaactggcaagagcaattgcaggccatggcacaacc
gttcattcatattcaactgcatacggcgaagctggacagtttcaaaatcacttaaatgtg
tatggcagagagggtgaaccctgcccacgatgtggaaccaaaatcgttaaaatcaagttg
gcccaaagaggcacgcacttttgcccgaagtgtcaacggttgcgtggtgttaagaaatga
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