Lentilactobacillus kefiri: DNL43_11050
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Entry
DNL43_11050 CDS
T06710
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lkf
Lentilactobacillus kefiri
Pathway
lkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DNL43_11050 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkf03019
]
DNL43_11050 (rnr)
03016 Transfer RNA biogenesis [BR:
lkf03016
]
DNL43_11050 (rnr)
Enzymes [BR:
lkf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DNL43_11050 (rnr)
Messenger RNA biogenesis [BR:
lkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DNL43_11050 (rnr)
Transfer RNA biogenesis [BR:
lkf03016
]
Prokaryotic type
tRNA degradation factors
DNL43_11050 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
QGV25782
LinkDB
All DBs
Position
complement(2283978..2286320)
Genome browser
AA seq
780 aa
AA seq
DB search
MQDNDLKNQIENVLRTYPDNVFTVEKIADVLRSHGSAAFKLIVQELASLERDKVAVVTQD
GKFQLNPDKQKLSGIFHANDKGFGFVAYDETAPDAYIAPDNTMNALNGDTVEMEIVRPAQ
PGSDRGPEGKVTAIAEHKYTRVVGPFEKSDDDKGYIGQLTLNDKKIAKYKFYINDVGLKP
TPGEVITAQITEYPDSKHPDYMVGIADEVIGSVDDPGIDILQIVYAHDIPAEFPEDVIQA
ADAIPDHVTEAEKVGREDITDQDLVTIDGESSKDLDDAVTAWKLPNGNYHLGVHIADVSH
YVQPGSAIDKEAFRRGTSVYLTDRVIPMLPRRLSNGICSLNEGQLRLCMSCEMEIDQSGN
IIKHRIHPSLMRSTARMTYTAVNNILESHDEKTMERYKKLVPMFETMGELHKILYKHRKA
RGAIDFDDNEAEIIVDEKGHPIDIKLRVRGTAERMIESFMLAANETVAKHYYEKHVPFIY
RVHETPDADRIRTFFETLTAFGINVKGDPEHITPKTLQNVLKKVVGKPEEMMVSVMLLRS
LKQARYADQELGHFGLAAPYYTHFTSPIRRYPDTMVHRLIHYYKDNGINDETKKRYANVL
DEIATTTSQYERRAVDAERDTDSMKKAEYMNDHLGEEFDGVVSSVMKFGLFIELPNTVEG
LVHISRMNDDYYQYVEQFMALVGRNTRRTYKMGQAIRVKVVNVDVKQSAVDFDIVDPEKT
PVSNMLPKRTYHNNYHGNNDRHGNSNGNSHSNHSNHSNNRNRNNNSHGNGNNGHRNHNKH
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagataatgatttgaaaaatcaaatagaaaacgttctccgaacatatccggacaac
gtatttactgtcgaaaaaattgctgacgttttacgctcacacggttctgccgcttttaag
ctgattgttcaagaattagcttctttggaacgcgataaagtcgctgttgttacgcaggat
ggtaagtttcagttgaatcctgacaagcaaaagctctcaggcattttccacgccaatgat
aagggctttggattcgttgcatacgatgaaactgcccctgatgcgtacattgctccggac
aatacgatgaatgccttgaacggtgatacggttgaaatggaaattgttcgacccgctcaa
ccaggttctgatcgtggtccagaaggtaaagtaaccgccattgccgagcacaagtatact
cgggttgttggcccatttgaaaagagcgatgacgataagggctacattggccaattgact
ttaaacgataaaaaaattgccaaatacaagttttatattaatgatgttggtttaaaacca
actcctggagaagtcatcactgctcaaattactgagtatccagattccaagcatcctgat
tatatggttggaattgccgatgaggtcattggatcagttgatgatcccggcattgatatt
ttgcagattgtgtatgctcatgatattccagccgaatttcctgaggatgttattcaagct
gccgatgccattcccgaccatgtaaccgaagccgaaaaagttggtcgtgaagatatcacg
gatcaagacttggttacgattgatggtgaatcatcaaaggatttggacgatgctgttact
gcatggaaactgcctaatggcaactatcatttaggggttcatattgccgatgtcagccat
tacgttcaaccgggaagtgccattgataaagaagcattccgccgtggaacttcagtttat
ttgactgaccgggttattccaatgctgccaaggagactttccaacggaatctgttcatta
aacgaaggccaactccgtctttgcatgagctgtgaaatggaaattgaccagtctggtaat
attatcaagcatcgaatccatccaagtttgatgagatcaactgctcggatgacttataca
gctgttaataatattttggagtcccatgatgaaaagacaatggaacgatacaaaaaactc
gttccaatgtttgaaacgatgggtgaacttcataaaattttgtacaaacatcgtaaagca
cgtggtgccattgactttgatgataatgaagcagaaattatcgttgatgaaaagggccac
ccaattgacattaagcttcgtgtccgtggaactgctgaacgaatgattgaatcattcatg
ttggctgccaatgaaacggttgccaagcattattatgaaaaacacgtgccatttatttac
cgtgtccatgaaactcctgatgccgaccggattcgaacattcttcgaaacgttgacggca
tttggcattaatgtcaaaggtgatcctgagcacattacgcctaagactttacaaaatgtt
ttaaagaaggttgttggtaaaccagaagaaatgatggtttctgtgatgttgctgcgtagt
ttgaagcaggcccgctatgctgaccaggaattaggtcactttggtttggctgcaccatac
tacacccacttcacatcaccaattcgtcgttatccggatacgatggttcaccgtttgatt
cattactataaagataatggcatcaatgacgaaaccaagaaacgttatgcaaatgtcctt
gatgaaattgcaaccacaacttcacaatatgaacgacgggctgtcgatgctgaacgggat
actgattcaatgaagaaagccgaatacatgaacgaccacttgggtgaagaattcgatggg
gttgtcagttctgttatgaagtttggcttgtttatcgaattacctaatacggttgagggc
ttggttcacattagtcgaatgaacgacgactactatcagtatgttgaacaatttatggcc
ttggttgggcggaacactcgacggacgtataaaatgggacaggcaatcagagttaaggtt
gtcaacgttgacgttaagcagagtgctgttgactttgacattgttgatcctgaaaagaca
cctgtcagcaacatgcttccaaaacggacttaccacaataattatcatggcaataatgat
cgacatggtaattccaacggtaattctcattccaatcactcgaatcattccaataaccgt
aatcggaacaataattcccacggtaatggtaataatggacatcgcaaccataataagcat
taa
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