Lactococcus lactis subsp. cremoris MG1363: llmg_1304
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Entry
llmg_1304 CDS
T00475
Symbol
vacB2
Name
(GenBank) putative exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
llm
Lactococcus lactis subsp. cremoris MG1363
Pathway
llm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
llmg_1304 (vacB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llm03019
]
llmg_1304 (vacB2)
03016 Transfer RNA biogenesis [BR:
llm03016
]
llmg_1304 (vacB2)
Enzymes [BR:
llm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
llmg_1304 (vacB2)
Messenger RNA biogenesis [BR:
llm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
llmg_1304 (vacB2)
Transfer RNA biogenesis [BR:
llm03016
]
Prokaryotic type
tRNA degradation factors
llmg_1304 (vacB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
CAL97897
UniProt:
A2RKT1
LinkDB
All DBs
Position
complement(1272922..1274925)
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AA seq
667 aa
AA seq
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MVQLSELASALKQTESKGVFSKHPKGFGFVHPEGETDKTNDIYIGQNETKFAMDGDKVTV
KVLYPKTEKRGASGQIIKINERAVVDTVGTYRSLSNRQAKALGYKGRIELFNDRISDTLY
IKQPLTGVQEEDVVSIKVTQYPTDTKAFEGKITQIIGHKGEVGLDILEVLYAMKIPQEFS
AETLAEAEAFSEELTQEDLQGREDYRNEITYTIDGEDSKDLDDAIHVKKLSNGHFELGVH
IADVSHYVTEGSSLNEEAYARATSVYVTDRVVPMLPVRLSNNLCSLNEAQERLTMSCLME
IDDKGKIITYKISPSVIKTTYRMTYSNVNKMIHQGQEGHREALEKYSKIADSIEVAVELH
EILETMRKDRGMIEFDESEAKIILDDEGYPIEIVKRDRDTAERMIESFMLMANETVALDF
QKKKLPSLYRVHETPKEKAFAKLMEAAAEAGFSLSSDSHQAINFFADEIKDTSFEKALTY
QLRHTMSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLLHLYPSDHSNRTKDEW
KERLPEIASHSSDMEHRAVVTERIIDAMKKAEYMLERIGEVYTGTITGVQKFGIFVALDN
TVEGLVRVPNLHTGTTEELEFDEEMSIIKGKKSETIYQVGKEIKIRVIAANKRKGTVDFE
QIAPEKN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggttcagctatcagaattagcatcagcacttaaacaaacagaaagtaaaggagtattt
tctaaacatcctaaaggctttggttttgtacatccagagggtgagacagacaaaactaat
gatatctacattggtcaaaacgaaactaaatttgcaatggatggagataaggttactgtt
aaggttttataccctaagacagaaaaacggggggcaagcggacaaattattaaaatcaat
gaacgagcagtcgttgatacagttggaacttaccgttctttatctaatcgccaagccaaa
gctttgggatataaaggtcgaatcgaactctttaatgaccgtatttcagatactctttac
ataaaacagcccttaacaggagtacaagaagaagatgtagtaagtattaaagttactcaa
tatccaacagatactaaagcatttgaaggaaaaattacgcaaatcattggtcataaaggt
gaagttggccttgatatcttagaagttttgtatgctatgaaaattccacaagaattctca
gctgaaacattagctgaggctgaggcattttctgaagaattaacccaagaagacttgcaa
ggacgtgaagactatcgtaatgaaatcacttataccattgatggagaggattctaaagat
ttagatgatgcgattcatgttaagaaattatcgaatggacattttgaattaggggtccac
attgctgatgtcagtcattatgtaaccgaaggttcttctttgaatgaagaagcttatgcg
cgagcaacctcggtttatgtgactgatagagtagttccaatgttacctgtcagattgtct
aataacctgtgctcacttaatgaagctcaagaacggctaacaatgtcttgcctaatggaa
attgatgataagggcaagattatcacttataagatatctccatcagtcataaaaacaact
taccgcatgacttatagcaatgtgaacaagatgattcatcaggggcaagaaggacaccgc
gaagcattagaaaaatattctaaaattgctgattcgatagaagtagccgttgaacttcat
gaaattctcgaaacaatgcgaaaagacagagggatgattgaatttgatgagagtgaagca
aaaataattttagatgatgagggttacccaattgaaattgtaaaacgtgaccgtgatact
gcagaacgcatgattgaatccttcatgcttatggcaaatgaaactgttgctcttgatttc
caaaagaaaaaattaccttcattgtatcgtgtccatgaaactcctaaggaaaaagcattt
gctaaattgatggaagctgctgcagaagctggattttctttgagttctgactctcatcaa
gccataaatttctttgctgatgagattaaagatacaagttttgaaaaagccttaacttat
caacttcgtcatactatgtcaacagcggtttattctgaaaaaaatacaaaacattttgga
cttgcagcgactaactacacacatttcacaagtccaattagacgttatcctgacttaatt
attcatcgtttattacatttatatccttctgaccattccaaccgtactaaggatgaatgg
aaagaacgtttgcctgaaattgctagtcactcttccgatatggaacaccgtgctgttgtc
actgaacggattattgatgcgatgaagaaagcagaatacatgttagaacgtatcggtgag
gtttatactggtacgatcacaggagtacaaaagtttggtatttttgtagcactagataat
actgttgaaggtttagttcgagtaccaaatttacatactgggacaacagaagaacttgaa
tttgacgaagaaatgagtattattaaagggaaaaaatcggaaacaatttatcaagttgga
aaagaaataaaaattcgtgttattgctgccaataaacgaaaaggaacagtagattttgaa
caaatcgctcctgaaaaaaactag
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