Legionella longbeachae: LLO_1943
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Entry
LLO_1943 CDS
T01183
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
llo
Legionella longbeachae
Pathway
llo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LLO_1943 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llo03400
]
LLO_1943 (mfd)
Enzymes [BR:
llo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LLO_1943 (mfd)
DNA repair and recombination proteins [BR:
llo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LLO_1943 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
DUF1474
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CBJ12326
Pasteur:
llo1943
UniProt:
D3HIU7
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All DBs
Position
2283457..2286897
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AA seq
1146 aa
AA seq
DB search
MPISTLLFQPPQAKQTWGQLHGSSLALALAEYCQQTSGIKLLIAQDNLSANQLQAELTFF
LNTASSQELLFFPDWETLPYDQFSPHQDIISERLYALSRIQQVTDAIIITSASTLMHRLC
PPEFLNQHALMLKEGQKLDLNAFRNQLQQSGYHCVNKVLEHGEYALRGSIIDVYPMGSGL
PFRIELFDDEIESLREFDTDTQRTIEKIKEINVLPAREFPLNEQSQLKFRRAFRELFSGN
PSQCPIYEAISEGQFPSGIEYYLPLFFDKTVTFFDYLPSTAKVCFIENIQDKAEQFWLEL
NERFEQRRYDISRPILSPSTCFINPNELLTLANTYQQLRLFHHASDKKGAVNFEVAPGPQ
LPIDRKTQEPLSQLRDYCSDSSRRYLIVVESAGRREVLLDLLKPSGLTAKIQSSWDSFIH
DTAKLNITTGELIYGCELIQNNIVIIVESQLFGEHSTPQRRSSQKLVDPDLIIRDMAELR
IGSPVVHLQFGVGRYQGLQHIESNGMASEFLVLAYAGEDKIYVPVTSLHLISRYTGVDSE
HAPLHKLGSDQWQREKKKAAEKIHDVAIELLDLYAKREAQPGHQYQVDHSDYAKFASGFP
FTETPDQLNAIEQIIKDMESSKPMDRLICGDVGFGKTEVAMRAAFVAVQSNKQVCVLVPT
TLLAGQHFESFRDRFADFPINIELLSRFRSNKESEAVLAGLKSGTVDIVIGTHKLFQSSI
AFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIRDISLMTT
PPAKRLAIKTFWQEKKDPIVREAILREILRGGQVFFLHNNVETIERICEDLQSLVPEAKI
RSAHGQMRERELERVMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPNQKSLTSDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGEL
LGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKIPELSAPMYQGPEIDLRISAVIPEDYIS
DVHNRLIMYKRISNAKNTQQLHDLQIELIDRFGLLPQQVKHLLLITELKLKAERMGIQKI
SAGAQQGKIEFGDTPTIDTGVLISLIQVHAKRYKMDGPQCLRFTLDSTSAEERLFEIGSL
LDKLTG
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgcccataagtacactactcttccaaccaccacaagccaaacaaacatggggacagctc
catggcagtagcctggcacttgcactggcagagtattgccaacaaacatctggaattaag
ctcttgatcgcacaagacaatctgagcgctaatcaattacaagcagagttaacttttttt
cttaatacggcttcgtctcaagaattacttttttttcctgattgggaaacactgccttat
gaccaattttccccacatcaggatattatttctgaacgattgtatgctttaagtcgtatt
caacaagtgactgatgcaattattatcacttcagcaagtaccttgatgcataggttatgt
ccccctgagtttttgaatcaacatgcattaatgcttaaagaagggcagaaattagaccta
aatgcttttcgcaaccaactccagcaatccggatatcattgtgtcaacaaagtactcgag
catggtgagtatgccttacggggttcaataattgatgtatatcccatgggctcaggttta
ccctttcgtatcgaactttttgatgatgaaattgaaagtttaagagaatttgatactgac
acgcagcgtaccatagaaaaaattaaagaaatcaatgtattacccgcgcgagaatttcct
ttaaacgaacaaagccaactcaaatttcggcgcgcttttagagagttattttctggaaac
ccaagccaatgtccgatttatgaagcaatcagtgagggacaattcccttctggtattgaa
tactatcttcctttgttttttgataaaacagtgactttttttgattatcttccaagcacg
gccaaggtatgtttcattgaaaatattcaagataaagcagagcaattctggctggagtta
aatgaacggttcgaacaaagacgatacgacattagcaggcctattttatctccatcgacc
tgttttattaatcctaatgaacttttaaccttggcaaatacttatcaacaattacgttta
tttcatcatgcctcagataaaaagggtgcagttaattttgaggttgctcctggcccacaa
ttaccgattgacaggaaaacccaagaacctttaagtcagctgcgtgattattgctctgac
tcttccagacgctacctaattgtggttgaaagtgctggacgacgtgaagtattacttgat
ctgctaaaaccaagtgggcttactgctaaaatacagtcctcatgggatagttttattcat
gatacagctaaactcaatataaccacaggagagctcatttacggatgtgagttaatccag
aataatattgtgattattgttgaatcacaattatttggagagcacagcacaccacaaaga
cgtagttcacaaaaattggttgatccagacctgattattcgtgatatggctgaattacgt
atcggctctcctgtagtgcatttgcagtttggtgttggacgttatcaaggattacagcat
attgagtccaacggaatggctagcgaatttttagttctcgcctatgcgggagaagacaaa
atttatgttccagtgacatcccttcatctcatcagccgttatactggtgtagatagtgag
catgcacccctgcataaattgggaagcgatcaatggcaaagggaaaagaaaaaagccgcc
gagaaaatccatgatgtggcgattgaattacttgacctctacgccaaaagagaagcacaa
ccgggacatcaatatcaagtcgatcacagtgactatgctaaatttgcaagcggttttcct
tttacagaaactccagatcaactaaacgcaattgaacaaattatcaaagatatggagtct
tcgaagcccatggatcgcttaatttgtggcgatgtgggttttggtaaaactgaggtagct
atgcgtgcggcatttgtggccgttcaaagcaataaacaagtgtgtgtcctggtaccgacc
acacttttggccgggcagcattttgaatcatttagggatcggttcgctgatttccctatt
aatatcgagctgctttcgcgtttccgatccaacaaagaaagtgaagcggtacttgctgga
ttaaaatcaggtactgtagatatcgttataggaacacataaactatttcaaagcagtatc
gcttttaaaaacctgggacttctcattattgatgaagagcaccgctttggggtaaaacaa
aaagagcatatcaaagcgctacgtacccacgtggatattttatcgatgacagccacacct
attcccaggacattaaatatggctatggcagggattcgcgatatatcattaatgactacc
ccccctgcaaaacgtttagcgattaaaaccttttggcaggaaaaaaaggatcctattgtt
cgtgaagccattttaagagaaattttaagaggtggccaagtatttttcttacataataat
gtcgaaaccattgagcgcatctgtgaggacctgcaaagtttagttccagaagctaaaatt
cgcagtgctcatgggcaaatgcgtgagcgtgagttagagcgcgtgatgtctgacttttat
catcaccgttttaatgttttggtatgtacaacaattattgaaacaggaatcgacatcccc
acggccaatacaattattattgatagagctgataaatttggcctggcacaacttcatcag
ctacgtgggcgtgtaggacgctcccaccatcaagcctatgcctatttgcttacgcccaac
caaaagtccttgacttctgacgctgtaaaacgccttgaagcaattgtatctttagaagac
ttaggagcaggctttactttagcgactcatgatttggaaattcgtggcgcaggagagctt
ttaggtgaagaacaaagtggtaacatgcacgccataggatttaatttatttatggagatg
cttgatagagccgtaaatgatttaaaagccgggaaaatacctgaattatccgctcccatg
tatcaaggcccagagatcgacttgcggattagtgcagtaattcctgaggattatatttct
gacgtccataatcggcttatcatgtataaacgaatttcaaatgcaaaaaatactcagcaa
ttacacgatttgcaaattgaactcattgatagatttggactgctcccccaacaagtgaaa
catttattattgattactgaattaaaattaaaagcagaaagaatggggattcaaaaaatc
agcgctggagcccagcaaggtaaaattgaatttggtgataccccaactatcgacactggc
gttttaatcagtttgatacaggtacatgccaaaaggtataaaatggatgggcctcaatgc
ttacgttttaccctcgacagcacatctgccgaggagcgtctttttgaaattgggtctttg
cttgataaattgacaggttaa
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