Lactococcus lactis subsp. lactis IO-1: lilo_0317
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Entry
lilo_0317 CDS
T02485
Symbol
rheA
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lls
Lactococcus lactis subsp. lactis IO-1
Pathway
lls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lilo_0317 (rheA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lls03019
]
lilo_0317 (rheA)
03009 Ribosome biogenesis [BR:
lls03009
]
lilo_0317 (rheA)
Enzymes [BR:
lls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
lilo_0317 (rheA)
Messenger RNA biogenesis [BR:
lls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
lilo_0317 (rheA)
Ribosome biogenesis [BR:
lls03009
]
Prokaryotic type
rRNA helicases
lilo_0317 (rheA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BAL50318
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All DBs
Position
339079..340722
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AA seq
547 aa
AA seq
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MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI
EKIDASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKAGA
HIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQTLLF
SATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLDVERPE
LAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAA
RGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIENMTKK
PMKGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEKFDAKELVAL
LLQGRVKDPDNQEEVKITAERPLPFNGEGKGFKKKGKGGGGRYKGRGNGDRDGNRGGYRG
NRDGKDGERGGDRKRNWKDRDDNRGGYRGKRDDRRFDDRKQGEKTPRKRTTGTEKSAGFV
MRSRGDK
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttagtgaactcggcctgtcagaaggaatcgtaaatacacttacagagattggt
tatgaacaaccaacaccaatccaagaacaaacaattaaacttgcacttgaagggcgtgac
gttctaggtcaagcgcaaacaggaactggtaaaacagcagcatttggtcttccaacaatt
gaaaaaattgatgcttctaatccagctattcaagcactcgttattgctccaacccgcgaa
cttgcggttcaaggacaagaagaacttttccgttttggtaaatcaaaaggacttaaagtc
cgtactgtttttggtggttcaagtattgaaaaacaaattaaaggccttaaagctggtgca
catattgttgtgggaacaccaggacgtttggttgacttgattaaacgtaaagcaattaaa
ttggatcaacttgaaactttgattcttgatgaagctgatgaaatgttgaacatgggtttc
ttggaagacattcatttcatcattgaaaaaacaccagaagctcgtcaaacattgcttttc
tcagcaacaatgcctgccgacatcaaaaaaattggtgtgaaattcatgaagaatcctgaa
cacatcaaaattgcagccaaagaaatgactgctgaccgtattgatcaatattttgtaaaa
acaaaagaatttgaaaaatttgatgttttgactcgtttgcttgatgttgaacgtccagaa
cttgcaattgttttcggtcgtacaaaacgtcgtgttgacgaattgattcgtggtcttaaa
ttgcgcggttaccgtgctgaaggaatgcacggagatttggaccaaaataaacgtttggct
gttttgcgtgatttcaaagcaggacatattgacgttttggttgcaactgacgttgctgct
cgtggactcgacgtgtcaggagttactcacgtttataactacgacattactcaagaccaa
gaaagctatgttcaccgtatcggtcgtaccggccgtgctggtaaatcaggacgttcagta
acatttgtttcatacaatgaaatgggttatcttcgtgccattgaaaatatgactaaaaag
ccaatgaaaggcttgaaaccacctacaaaagaagaagcttaccaagcgtcactctcagta
gctatggatgatgtgcttcgtgatttgtctgatgattcagctaaagcaaaattggctaaa
tttgacaaacaagcagcgagcctacttgaaaaatttgatgctaaagaattggttgcttta
cttcttcaaggtcgcgtaaaagaccctgataatcaagaagaagttaagattacagctgaa
cgtccattgccatttaatggtgaaggaaaaggcttcaagaaaaaaggtaaaggtggcggc
ggacgctataaaggtcgtggaaatggcgaccgtgatggaaaccgtggcggctaccgtggc
aatcgtgatggtaaagatggcgaacgcggtggagatcgtaaacgcaactggaaagaccgt
gatgataaccgtggcggttaccgtggaaaacgtgatgaccgtcgttttgacgatcgtaaa
caaggagaaaaaactcctcgtaaacgtaccacaggaactgaaaaatcagctggcttcgta
atgcgtagccgtggtgacaaataa
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