Lutra lutra (Eurasian river otter): 125081913
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Entry
125081913 CDS
T08100
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03013
Nucleocytoplasmic transport
llv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125081913
03015 mRNA surveillance pathway
125081913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125081913
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125081913
5.6.2.5 RNA 5'-3' helicase
125081913
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125081913
mRNA cycle factors
Common to processing body (P body) and stress granule
125081913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
125081913
NCBI-ProteinID:
XP_047552786
LinkDB
All DBs
Position
1:complement(209112093..209149785)
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AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagttctcagacgctcaccttcctggacaccgaggaa
gccgagctgctcggcgccgacacacagggctcggagttcgagttcaccgacttcactctc
cccagccagacgcagacgcccccgggtggccccggcggccccggaggaggtggcgcgggc
ggcccggtaggcgcgggcgcaggagctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggccgtggatgacagcgtggccaagaccagccagttg
ttggctgagttgaacttcgaagaagatgaggaggatacctattacactaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaacacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgcggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaggccgactcagtagtggtgctgctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggaacagctgcgggcccggcagatcaccgcc
cagcagatcaacaagctggaagagctctggaaggaaaatccttctgccaccttggaggac
ctggagaagccaggtgtggacgaggagccgcaacacgtgctcctgcggtatgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagttggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggggatgagatatgcctgaggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggt
gatgagatcgccattgagcttcggagcagtgtgggtgcgcctgtggaggtgacgcataac
ttccaggtggattttgtgtggaagtccacctcatttgataggatgcagagtgcattgaaa
acgtttgccgtggatgagacgtctgtctcgggctacatctaccataagctgctcgggcat
gaggtggaggatgtgatcatcaagtgccagctgcccaagcgcttcacggcacaggggctc
cccgacctcaaccattcccaggtttatgctgtcaagactgtgctgcagagaccgctgagt
ttgatccagggaccaccaggcacagggaagacagtgacctctgccaccatcgtctaccac
ctcgctcggcagggcaatgggcccgtgcttgtctgtgctccaagtaacatagctgtggac
cagctgactgagaagatccaccagactgggctgaaggtcgtgcggctctgcgccaagagc
cgtgaggccattgactccccagtgtccttcctggccctgcacaaccagatcaggaacatg
gatagcatgccggaactgcagaagctgcagcagctgaaggacgagacgggggagctgtct
tctgctgacgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatg
aacgcagatgtcatctgctgcacgtgtgtgggtgcaggggacccaaggctcgccaagatg
cagttccgctccattttaattgacgagagcacccaggccactgaaccagagtgcatggtc
cctgtggtccttggcgccaagcagctcatcctcgtgggcgaccactgccagctgggccct
gtggtgatgtgcaagaaagcggccaaggcgggactgtctcagtcgctcttcgagcgcctg
gtggtgctgggcatccgccccatccgcctgcaggtccagtaccggatgcaccccgcgctc
agcgccttcccttccaacatcttctacgagggctccctccagaacggcgtcactgcagct
gaccgagtgaagaaggggtttgacttccagtggccccagcctgataagccaatgttcttc
tacgtgacccagggccaagaggagattgccagctcaggcacctcctacctgaacaggacg
gaagctgccaacgtggagaagatcaccacgaagctgctgaaggcaggggccaagcccgac
cagatcggcatcatcaccccgtacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggagatcgccagcgtggacgca
ttccaggggcgagagaaggacttcatcatcctttcctgtgtgcgagccaacgagcaccaa
ggcatcgggtttttaaatgaccccaggcggcttaatgtggccctgactagagcaaggtac
ggggtcattatcgtgggcaacccaaaggccctatccaagcagccactctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggccgctgaacaacttgcgcgag
agcctcatgcagttcagcaagcccaggaagcttgtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccatcatccccggatcagtctacgat
cgcagcagccagggccggccctcaaacatgtacttccagacccacgaccagattggcatg
atcagcgcaggccccagccacgtggccgccatgaacattcccatccccttcaatctggtc
atgccccccatgccaccgccagggtacttcggacaagcaaatgggccggcggcaggccgg
ggtacccctaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaagacgtggcgtcgcagccg
ttctcccagggcgctctgacccagggctacatctccatgagccagccctcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggggatgagtttaag
tcacagattgatgtggcactgtcgcaagactccacgtaccaaggggagcgggcataccag
cacggcggagtgacagggctgtcccagtactag
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