Lutra lutra (Eurasian river otter): 125100101
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Entry
125100101 CDS
T08100
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03022
Basal transcription factors
llv03420
Nucleotide excision repair
llv05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125100101
09124 Replication and repair
03420 Nucleotide excision repair
125100101
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
125100101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125100101
03400 DNA repair and recombination proteins [BR:
llv03400
]
125100101
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125100101
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125100101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
VWA_3
Motif
Other DBs
NCBI-GeneID:
125100101
NCBI-ProteinID:
XP_047585917
LinkDB
All DBs
Position
5:99132087..99156818
Genome browser
AA seq
395 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEHNGEKFCYGCQGELKDQHVYVC
AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPTSSNI
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaacctgaaagaactaagcgatgggaaggaggctatgaaaggacgtgggag
attcttaaagaagatgaatcgggatcacttaaagctacgatagaagacattctcttcaaa
gcaaagagaaaaagagtatttgagcaccatggacaagttcgacttggaatgatgcgtcat
ctttatgtggtagtagatggatcaagaacaatggaagaccaagacttaaagccaaataga
ctgacttgtactttaaagttgttggaatacttcgtagaagaatattttgatcaaaatcct
attagtcagattggaataattgtaacaaagagtaaaagagctgaaaaactgactgaactc
tcaggaaacccaaggaaacatataacatctttgaagaaagctgtagatatgacctgccat
ggagaaccatctctctataactccttaagcatggctatgcaaactctaaaacacatgcct
ggacatacaagtagagaagtcctaatcatctttagcagcctcacaacttgtgatccatct
aatatctatgatctaatcaagaccctaaaggcagctaaaataagagtgtctgttatcgga
ttgtctgcagaggttcgggtttgcactgtacttgctcgtgaaactggtggcacataccat
gttattttagatgaaagccattacaaagaattgctgacacatcatgttagtcctccacct
gctagctcaagttctgaatgttcacttattcgcatgggatttcctcagcataccattgct
tctctgtctgatcaagacgcaaaaccctctttcagcatggcgcacttggatagcaacact
gagccaggacttacattaggaggatacttctgcccacagtgtcgggccaagtactgtgag
cttccagttgaatgtaaaatctgtggtctcactttggtgtctgctccacatttggctcgg
tcctaccatcatttatttcctttggatgcttttcaagaaattcctctagaagaacataat
ggagaaaaattttgttatggatgtcagggggaattgaaagaccaacatgtctatgtttgt
gctgtgtgccaaaatgttttctgtgtggactgtgatgtttttgttcacgactctcttcat
tgttgtcctggctgtattcataagattccaacttcctcaaatatttga
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