KEGG   Legionella lytica: J2N86_14740
Entry
J2N86_14740       CDS       T08304                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lly  Legionella lytica
Pathway
lly03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    J2N86_14740 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lly03400]
    J2N86_14740 (ligD)
Enzymes [BR:lly01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J2N86_14740 (ligD)
DNA repair and recombination proteins [BR:lly03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     J2N86_14740 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme YvfG
Other DBs
NCBI-ProteinID: USQ15225
LinkDB
Position
pLlyPCM2298_1:complement(192134..194641)
AA seq 835 aa
MGLSQYKKKRDFSKTPEPKGNVGKEPSRLFIIQKHAASHLHYDFRLELHGVLKSWAVPKG
PSLDPKVKRLAMHVEDHPIQYGSFEGIIPKGQYGGGTVMLWDKGTWEPLDEKPYEAYEKG
HLRFLLHAEKLQGRWDLIRFKDEKHWFLIKHEDEFAQSQEKYDITKALYRSVVSNYTMDE
ITANYERIWNSAGEQKVKSPQKPKNMKQAKPPVTLPKGLVPSEYPGFISPQLATLVDKPP
LGAQWIHEIKFDGYRILAYKNGSEVNLTSRNNNAWTNDFPSIVEAVSRLPFKQLILDGEV
VVLDKDGRSDFQLLQNSLKSNNGASFVYFVFDLLYFEGYDLRALPLLERKAILKNILSFT
IPGLHYSDHIIKKGNDLYQYSCAQNLEGIISKLSTAPYLSKRSKNWLKIKCLKRQEFVIG
GYTLPKGERSHFGSLFLGAYNKHGTLDFTGNVGTGFTEKSLNEINKLLQKNKSPKNPFNN
NPPGYTTAHWLEPNLVCDVEFTEWTKDGHIRHPSFKGIRLDKKASEVVRELEMPIEKIKK
QKADSKHSEAPFVITHPDKILYPEDEITKKDLLNYYETISEYILPYISYRPLTLVRCPSS
YAKCFYQRHFNESTPETLLPFEDPNDKEHERYIYLNNREGLLSLVQMGVLEIHPWGSRID
HIEQPDTLVIDLDPAAGIPWKQVVSAALEVREHLAQYQLKSFVKSTGGKGLHVVIPIIPE
YDWEIIKEFTHTFVKFLEKLKPSEYISTMTKSKRTGKIFVDYLRNQRTATAIGAYSTRAR
PHAPVSTPLAWDELSNRIEENSYTIKTLPKRLEQLKEDPWKEYWQIKQSLRLNEL
NT seq 2508 nt   +upstreamnt  +downstreamnt
atgggtcttagtcaatataaaaaaaagagagatttctcaaaaacaccggagcctaaagga
aacgtaggcaaagaaccttcacgcctttttattattcaaaaacatgcagccagtcatctt
cattatgattttcgcctagagctgcatggggtattaaaaagttgggccgttcctaaaggt
ccctctttagatcccaaagtaaaacgcctagccatgcacgttgaagatcatcccattcaa
tatggcagctttgaaggaattatacccaaaggtcagtatggaggtgggaccgtcatgcta
tgggataaagggacatgggaaccattagatgaaaaaccctatgaagcttatgaaaaaggt
catttacgatttctgcttcatgcagaaaagcttcaaggaagatgggatttaattcgtttt
aaagatgaaaaacattggttcttaataaagcacgaagacgaattcgcacaaagccaagaa
aaatacgacattactaaagcactttatagaagtgtagtttccaattacaccatggatgaa
attactgccaattatgagcgtatttggaatagtgcgggagaacaaaaagtaaaatcccca
caaaaaccgaaaaacatgaaacaggcaaaaccacctgtgaccttacctaagggtttagta
cccagtgaatatccaggatttatttctcctcaactcgccacattagttgataaaccccct
cttggagcacagtggattcatgaaatcaaatttgatggttatcgcattcttgcttataaa
aatggttcagaggtcaatcttacctccagaaataataatgcctggactaatgattttccc
tccattgtggaggctgtcagtcgtctaccctttaaacaactcattttggatggggaggtg
gttgttctagataaggacggtcgttccgattttcaactactacaaaactctttaaaaagt
aataatggggcatcatttgtctattttgtgtttgatcttctttattttgaagggtatgac
ttaagagcactgcctttattagagcgtaaagcaattctaaaaaatattttatcgtttact
atccccggattacattacagtgaccacattataaaaaaaggtaacgatctttatcagtat
tcttgtgctcaaaatttggaaggaataatttctaaactcagtacagcaccctatctctct
aaacgcagcaaaaactggttaaaaattaaatgcttaaaacgacaagaatttgttattgga
gggtacactttacccaaaggagaacgctcacattttgggtcactttttttaggtgcttac
aataagcacggaaccttagattttacaggcaatgtcggtacgggctttactgaaaaatcc
ctaaatgagatcaataaactcttacaaaaaaacaaatcccccaaaaacccgtttaataac
aatcctccaggctatacgacggctcattggcttgaacctaatttggtatgtgacgttgaa
tttactgaatggactaaagacggtcacattcgtcacccaagttttaaagggatacgttta
gataaaaaagcttctgaggtggtacgtgagttagaaatgcccatagaaaagataaaaaaa
cagaaagcggactcaaaacactcagaagcaccttttgtgattacacatcccgataagatt
ctttatccagaggatgaaatcactaaaaaagatttacttaactattacgaaacaatcagt
gagtatattttaccttacatttcgtataggcctctaactttagtgcgatgcccatccagt
tacgctaaatgtttttatcaacgccattttaatgagtctactccagaaacattactccca
tttgaagatcccaatgataaagaacatgaacgttatatttatcttaataatcgggaagga
ctattgagtctggtacaaatgggcgttttagaaatccacccttggggtagtcgcatcgat
catattgaacaacccgacactctggtgattgatttagatcccgcagctgggattccttgg
aaacaagtggtcagcgctgcccttgaagtaagggagcatctagcccaatatcagttaaaa
tcgtttgttaaaagcacgggcggtaaagggcttcatgtcgttatccccattattccagaa
tatgattgggagataataaaagagtttactcatacgtttgttaaatttttagaaaagctt
aaacctagtgaatacatcagcactatgactaagtccaaacgaactgggaaaatatttgta
gactatttaagaaatcaaagaacagctaccgcgattggagcttattcaacacgggccagg
ccgcatgcccctgtttcaacacctcttgcctgggatgagttaagcaatcgcattgaagaa
aatagctatactattaaaacgttgcccaaacggcttgaacaattaaaagaagatccgtgg
aaggaatattggcaaattaaacagtctttacgattaaatgagctctaa

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