Legionella lytica: J2N86_14740
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Entry
J2N86_14740 CDS
T08304
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lly
Legionella lytica
Pathway
lly03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J2N86_14740 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lly03400
]
J2N86_14740 (ligD)
Enzymes [BR:
lly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J2N86_14740 (ligD)
DNA repair and recombination proteins [BR:
lly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J2N86_14740 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
YvfG
Motif
Other DBs
NCBI-ProteinID:
USQ15225
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All DBs
Position
pLlyPCM2298_1:complement(192134..194641)
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AA seq
835 aa
AA seq
DB search
MGLSQYKKKRDFSKTPEPKGNVGKEPSRLFIIQKHAASHLHYDFRLELHGVLKSWAVPKG
PSLDPKVKRLAMHVEDHPIQYGSFEGIIPKGQYGGGTVMLWDKGTWEPLDEKPYEAYEKG
HLRFLLHAEKLQGRWDLIRFKDEKHWFLIKHEDEFAQSQEKYDITKALYRSVVSNYTMDE
ITANYERIWNSAGEQKVKSPQKPKNMKQAKPPVTLPKGLVPSEYPGFISPQLATLVDKPP
LGAQWIHEIKFDGYRILAYKNGSEVNLTSRNNNAWTNDFPSIVEAVSRLPFKQLILDGEV
VVLDKDGRSDFQLLQNSLKSNNGASFVYFVFDLLYFEGYDLRALPLLERKAILKNILSFT
IPGLHYSDHIIKKGNDLYQYSCAQNLEGIISKLSTAPYLSKRSKNWLKIKCLKRQEFVIG
GYTLPKGERSHFGSLFLGAYNKHGTLDFTGNVGTGFTEKSLNEINKLLQKNKSPKNPFNN
NPPGYTTAHWLEPNLVCDVEFTEWTKDGHIRHPSFKGIRLDKKASEVVRELEMPIEKIKK
QKADSKHSEAPFVITHPDKILYPEDEITKKDLLNYYETISEYILPYISYRPLTLVRCPSS
YAKCFYQRHFNESTPETLLPFEDPNDKEHERYIYLNNREGLLSLVQMGVLEIHPWGSRID
HIEQPDTLVIDLDPAAGIPWKQVVSAALEVREHLAQYQLKSFVKSTGGKGLHVVIPIIPE
YDWEIIKEFTHTFVKFLEKLKPSEYISTMTKSKRTGKIFVDYLRNQRTATAIGAYSTRAR
PHAPVSTPLAWDELSNRIEENSYTIKTLPKRLEQLKEDPWKEYWQIKQSLRLNEL
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgggtcttagtcaatataaaaaaaagagagatttctcaaaaacaccggagcctaaagga
aacgtaggcaaagaaccttcacgcctttttattattcaaaaacatgcagccagtcatctt
cattatgattttcgcctagagctgcatggggtattaaaaagttgggccgttcctaaaggt
ccctctttagatcccaaagtaaaacgcctagccatgcacgttgaagatcatcccattcaa
tatggcagctttgaaggaattatacccaaaggtcagtatggaggtgggaccgtcatgcta
tgggataaagggacatgggaaccattagatgaaaaaccctatgaagcttatgaaaaaggt
catttacgatttctgcttcatgcagaaaagcttcaaggaagatgggatttaattcgtttt
aaagatgaaaaacattggttcttaataaagcacgaagacgaattcgcacaaagccaagaa
aaatacgacattactaaagcactttatagaagtgtagtttccaattacaccatggatgaa
attactgccaattatgagcgtatttggaatagtgcgggagaacaaaaagtaaaatcccca
caaaaaccgaaaaacatgaaacaggcaaaaccacctgtgaccttacctaagggtttagta
cccagtgaatatccaggatttatttctcctcaactcgccacattagttgataaaccccct
cttggagcacagtggattcatgaaatcaaatttgatggttatcgcattcttgcttataaa
aatggttcagaggtcaatcttacctccagaaataataatgcctggactaatgattttccc
tccattgtggaggctgtcagtcgtctaccctttaaacaactcattttggatggggaggtg
gttgttctagataaggacggtcgttccgattttcaactactacaaaactctttaaaaagt
aataatggggcatcatttgtctattttgtgtttgatcttctttattttgaagggtatgac
ttaagagcactgcctttattagagcgtaaagcaattctaaaaaatattttatcgtttact
atccccggattacattacagtgaccacattataaaaaaaggtaacgatctttatcagtat
tcttgtgctcaaaatttggaaggaataatttctaaactcagtacagcaccctatctctct
aaacgcagcaaaaactggttaaaaattaaatgcttaaaacgacaagaatttgttattgga
gggtacactttacccaaaggagaacgctcacattttgggtcactttttttaggtgcttac
aataagcacggaaccttagattttacaggcaatgtcggtacgggctttactgaaaaatcc
ctaaatgagatcaataaactcttacaaaaaaacaaatcccccaaaaacccgtttaataac
aatcctccaggctatacgacggctcattggcttgaacctaatttggtatgtgacgttgaa
tttactgaatggactaaagacggtcacattcgtcacccaagttttaaagggatacgttta
gataaaaaagcttctgaggtggtacgtgagttagaaatgcccatagaaaagataaaaaaa
cagaaagcggactcaaaacactcagaagcaccttttgtgattacacatcccgataagatt
ctttatccagaggatgaaatcactaaaaaagatttacttaactattacgaaacaatcagt
gagtatattttaccttacatttcgtataggcctctaactttagtgcgatgcccatccagt
tacgctaaatgtttttatcaacgccattttaatgagtctactccagaaacattactccca
tttgaagatcccaatgataaagaacatgaacgttatatttatcttaataatcgggaagga
ctattgagtctggtacaaatgggcgttttagaaatccacccttggggtagtcgcatcgat
catattgaacaacccgacactctggtgattgatttagatcccgcagctgggattccttgg
aaacaagtggtcagcgctgcccttgaagtaagggagcatctagcccaatatcagttaaaa
tcgtttgttaaaagcacgggcggtaaagggcttcatgtcgttatccccattattccagaa
tatgattgggagataataaaagagtttactcatacgtttgttaaatttttagaaaagctt
aaacctagtgaatacatcagcactatgactaagtccaaacgaactgggaaaatatttgta
gactatttaagaaatcaaagaacagctaccgcgattggagcttattcaacacgggccagg
ccgcatgcccctgtttcaacacctcttgcctgggatgagttaagcaatcgcattgaagaa
aatagctatactattaaaacgttgcccaaacggcttgaacaattaaaagaagatccgtgg
aaggaatattggcaaattaaacagtctttacgattaaatgagctctaa
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