Lysobacter luteus: LYB30171_01845
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Entry
LYB30171_01845 CDS
T08395
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
llz
Lysobacter luteus
Pathway
llz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LYB30171_01845 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llz03400
]
LYB30171_01845 (mfd)
Enzymes [BR:
llz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LYB30171_01845 (mfd)
DNA repair and recombination proteins [BR:
llz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LYB30171_01845 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
RecG_dom3_C
UB2H
AAA_30
AAA_22
SecA_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CAG4975139
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All DBs
Position
1:1972207..1975728
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AA seq
1173 aa
AA seq
DB search
MQAPRPPRLPSPPLPRAGQQRAWWRAPASPSALAHHLVEAATAHDGPLLVVARDNHAAQQ
LESDLHSLLAGAPADGGLPIVHFPDWETLPYDHFSPHPEIVSQRLAALHRLPTLKRGIVV
VPVQTLLQRLAPVRHIVGGSFDVRVGERLDLDAEKRRLESAGYRHVPQVLDPGDFAVRGG
LLDVYPMGADQPFRVELLDDEIDTIRGFDPESQRSLDRIEAVHLLPGREVPLDEASLKRA
LDALRDRFDLDTRRSALYQDLKAGIAPAGIEYYLPLFFDDERGREPTSLLFDYFDASALP
VIGDGALEAAEQFWKHTGERYEQRRHDVERPLLPPEALYLSPDALRERLNQAARIEVCGE
GHPQRERAEPLGSQPAPSLPLVARDHAPADALKSFLRSYPGRVLVAADSPGRREALLEIL
ASAGLQPVVLPDFRTFLEGALGGSGAPKEMLSIAVAPLEDGFALDVPQLTVLTERQLFPE
RAGQPRRRKRAGREPEAIIRDLGELTEGAPIVHEDHGVGRYRGLVTLEAGGEKNEYVEIE
YAKGDRLYVPVGQLHLINRYSGASPETAPLHSLGGEQWTRAKKKAQEKVRDVAAELLEIQ
AKRQARAGLAIEVDRAMYEPFAAAFPFEETPDQHAAIEAVLRDLQSSQPMDRVVCGDVGF
GKTEVAVRAAFATAIAGKQVAVLVPTTLLAEQHYRNFRDRFADWPLKVEVLSRFKTAKEI
KAELEKAAEGTLDVIVGTHRLLQKDVRFKNLGLVIVDEEQRFGVRQKEALKALRANVHLL
TLTATPIPRTLNMAMAGLRDLSIIATPPAHRLAVQTFVVPWDDSQLREAFQRELARGGQV
YFLHNDVESIGRMHRELQELVPEARIGVAHGQMPERELERVMLDFHKQRFNVLLSTTIIE
SGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDHRSITADAKKRLDA
IAAMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKRGELP
DVDATEARGAEVELHVPALIPEDYLPDVHTRLTLYKRIAGARDADELRELQVEMIDRFGL
LPDPAKYLFAIADLKLQATALGIRKLDIGESGGRIQFVEKPNVDPMAIIRLIQGQPRLYR
MDGPDRLRLTLDLPGAPERLNAARGLLTVLGKG
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccccccgccccccccgacttccgtccccgccgctgcccagggccggccagcag
cgcgcctggtggcgtgcgccggcttcgccatcggcgctcgcccaccacctcgtcgaagcg
gccaccgcccacgacggcccgctgctggtcgtcgcgcgcgacaaccatgccgcccagcag
ctcgagtcggacctgcactcgctgctggctggcgcaccggccgacggtgggttgccgata
gtgcatttcccggactgggaaacgctgccctacgatcacttcagcccgcaccccgaaatc
gtcagccagcgcctggccgcgctgcaccggctaccgaccctcaagcgcggcatcgtggtc
gtgccggtgcagacgctgctgcagcggctggcgccggtgcgccacatcgtcggcggcagt
ttcgacgtccgggtcggtgaacggctggacctcgacgccgagaagcggcggctcgaatcg
gcgggttaccgccacgtcccacaggtgctggacccgggcgacttcgccgtgcgcggtggc
ctgctcgatgtctacccgatgggcgcagaccagccgttccgcgtcgaactgctggacgat
gagatcgacaccatccgcggcttcgaccccgagagccagcgctcgctcgacaggatcgag
gcggtgcacctgctgcccggccgcgaggtcccgctcgacgaggcctcgctgaagcgtgcg
ctggatgcgctgcgcgaccggttcgacctcgacacccgccgcagcgcgctctaccaggac
ctcaaggcgggcatcgccccggccggcatcgagtactacctgccgcttttcttcgacgac
gaacggggccgcgagcccaccagcctgctgttcgattacttcgatgcgagcgccttgccg
gtgatcggcgacggcgcgctggaggcggccgagcagttctggaaacacaccggcgagcgc
tacgagcagcgccgccacgacgtcgagcgcccgctgctgcctccggaggcgctgtacctg
tcgcccgatgcgctgcgcgagcggctcaaccaggcggcccggatcgaggtctgcggcgag
ggccatccgcagcgcgagcgcgccgagccgctgggcagccagcccgcgccgtcgctgccg
ctggtcgcgcgcgaccacgccccggccgacgcactcaagtccttcctgcgcagctacccc
ggccgggtactggtggcggccgactcgcctggccgccgcgaggcgctgctcgagatcctg
gcgtccgccggtctccagcccgtggtgctgccggacttccgtaccttcctcgagggcgca
ctgggaggctccggcgcgcccaaggagatgctgtccatcgcggtggcaccgctggaggac
ggcttcgccctcgacgtcccgcagctcaccgtgctcaccgagcgccagctgttccccgaa
cgtgcgggccagccacgtcgccgcaagcgcgccgggcgcgaacccgaagcgatcatccgc
gacctcggcgaactgaccgaaggagcgccgatcgtccatgaggaccatggcgtcggccgc
taccgcggcctggtcacgctcgaagccggcggcgagaagaacgagtacgtcgagatcgag
tacgccaagggcgatcggctgtacgtgccggtcggccagttgcacctgatcaaccgctac
tccggcgcctcgccggagacggcgccgctgcacagcctcggcggcgagcagtggacccgc
gccaagaagaaggcacaggagaaggtccgcgacgtcgccgcagaactgctggagatccag
gccaagcgccaggcccgggccggcctggcgatcgaggtcgaccgcgcgatgtacgagccg
ttcgcggcggcgttcccgttcgaggagacccccgaccagcacgctgcgatcgaggccgtg
ctgcgcgacctgcagtcgagccagccgatggaccgggtggtgtgcggcgatgtcggcttc
ggcaagaccgaagtcgcggtgcgtgcggcgttcgcgaccgcgatcgccggcaagcaggtc
gccgtgctggtcccgaccacgctgctggccgagcagcactaccgcaatttccgcgaccgc
ttcgccgactggccgctcaaggtggaggtgctgtcgcgcttcaagacggccaaggagatc
aaggccgaactggagaaggccgccgaaggcacgctcgacgtcatcgtcggcacccaccga
ctgctgcagaaggacgtgcgtttcaagaacctcggcctcgtgatcgtcgacgaggagcag
cgcttcggcgtccgccagaaggaagcgctgaaggccttgcgcgccaatgtccacctgctg
accctgaccgctacgccgatcccacgcacgctcaacatggcgatggccggcctgcgcgac
ctgagcatcatcgccaccccgcccgcgcaccggctggcggtgcagaccttcgtcgtgccg
tgggatgacagccagctgcgcgaagcgttccagcgcgagctcgcccgcggcggccaggtg
tacttcctgcacaacgatgtcgagagcatcggccgcatgcaccgcgaactgcaggaactg
gtgcccgaggcgcgcatcggcgtcgcccacggccagatgcccgagcgcgagctggagcgg
gtgatgctcgacttccacaagcagcgcttcaacgtgctgctgtcgaccaccatcatcgag
tcgggcatcgatatccccaacgccaacaccatcatcatcaaccgcgccgaccggttcgga
ctggcgcagctgcaccagttgcgcggtcgcgtgggccgcagccaccaccgcgcctacgcc
tacctggtggtacccgaccaccgctcgatcaccgccgacgcgaagaaacggctcgatgcc
atcgcggcgatggatgaactgggcgccggcttcaccctggccacccacgacctggagatc
cgcggcgccggcgagctgctgggcgaggaccagagcgggcagatggccgaggtcggcttc
agcctctacaccgagttgctggagcgcgcggtccggtcgatcaagcgcggcgaactgccc
gacgtggacgccaccgaagcgcgcggcgccgaggtcgagttgcacgtcccggcgctgatc
cccgaggactacctgcccgacgtccacacccgcctgacgctgtacaagcgcatcgcgggc
gcgcgcgacgccgacgagctgcgcgaacttcaggtcgagatgatcgaccgcttcggcctg
ctgcccgacccggcgaaatacctgttcgcgatcgccgacctcaagctgcaggccacggcc
ctgggcatccgcaagctcgacatcggcgagagcggcgggcggatccagttcgtcgagaag
cccaacgtcgacccgatggcgatcatccgcctgatccagggccagccccgcctctaccgg
atggacggtccggacagattgcgcctgacgctggacctgcccggtgcgccggagcggctc
aatgcggcgcgcgggctgttgacggtgctcggcaagggctaa
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