Leishmania major: LMJF_08_0080
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Entry
LMJF_08_0080 CDS
T01014
Name
(RefSeq) putative ATP-dependent DEAD/H RNA helicase
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lma
Leishmania major
Pathway
lma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LMJF_08_0080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lma03041
]
LMJF_08_0080
Enzymes [BR:
lma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LMJF_08_0080
Spliceosome [BR:
lma03041
]
Complex A
U2 snRNP components
U2 related factors
LMJF_08_0080
Complex B
LMJF_08_0080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
5649289
NCBI-ProteinID:
XP_001681037
UniProt:
Q4QIG1
LinkDB
All DBs
Position
8:20993..23050
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AA seq
685 aa
AA seq
DB search
MNYAPIRTDFYVVPPDMTNLTAQEMRELLRELDGAKVRGQDVPRPIRSWHGTGLPDRVLE
VLEEHEYKCPFAVQSLGVPALMSGRDLLLTAKTGSGKTLCYALPLIRHCADQPRCEKGEG
PIGLVLVPTQELAMQVFTLLDELGEAARLRCVASYGSTSLSDNIRHAKVGCELMVATPGR
LLDLLTVNGGKTLSLSRVSFVIVDEADRLFDSGFMEHVEAFLKNIRPDRVTGMISATMPK
ELRGVVAQHLRNPVVISVGGKPTPASNVEQQFFFFDEEVYDANNIKADMSPRLVKLVALL
GDEGGDGQNLILVFTQRKEEVDELLGRLTTLGYANRVATLYSGMDPIDREFALEHFVPGK
QFILVATAVAERGLDIPYLGLVINYRLPNHYEAYVHRIGRTGRAGRSGRAVSFFTRGKDD
DIAPELVEGLERAEQRVPEELYEVAEKVRALRKSGDARYNSGFFRGYRDAKAQRFTDRDK
KEKMREAARAAGLEQFLSSSSESDSDASSDENANITAVPVQSRARAASAKEAAANAMALT
LHRGAHSGALTLSSAQEDRISKALAFAQKTTTATTMAADEATMVRFQSEYPINDLPDAVR
GKLQSGTFMRSIAEETETSLIRKGVYFDPRYKHSRRMKEGEKPLYLLIVGRSMEAVRAAR
SKLDEVKAELLSKQKKTGSVTGATI
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgcccccattcgcacagacttctacgtggtgccgccggacatgacgaacctc
acagcacaggagatgcgagagctgttgcgggagctggatggggcaaaagttcgcgggcaa
gatgtaccgcggccgattcgctcctggcatggcaccggactgccggatcgcgtgctggag
gtgctggaggagcacgagtacaagtgcccttttgcggtgcagtcacttggcgtgcctgcg
ctgatgagcggacgggatttactcctcacagcaaagacggggtccggcaaaacgctctgc
tacgcgctgccgctcatccggcactgcgcggaccagccgcggtgtgagaagggcgagggt
cctatagggctggtacttgttcccacgcaggagctcgctatgcaggtattcacgcttctc
gacgagctgggggaggctgctaggctgcgctgcgtcgcctcgtacggcagcacgtcacta
tccgacaatattcgtcatgccaaggtggggtgtgagttgatggtggcaacgcccggtcgt
ctgctagaccttctcacagtgaacggcgggaagacgttgagcctgtcccgcgtttccttc
gtcatcgttgacgaggcggaccgcctcttcgacagcggcttcatggagcacgtggaagcg
tttctaaaaaacatacgccctgaccgcgtaacagggatgatcagcgctacgatgccgaag
gagctgcgcggggtagtagcgcagcacctacggaaccccgtcgtcatttccgtcggcgga
aaaccgacgcctgcctcaaatgtcgagcagcagttcttctttttcgacgaggaggtgtac
gacgcgaacaacatcaaggcagacatgagcccacgtcttgtaaagctagtggcgctgctg
ggcgatgagggcggtgacggtcagaacctaatcctggtctttactcaacggaaggaggag
gtagacgagttgctggggcggcttaccacgctgggctacgccaaccgcgtggcaacactc
tacagcggcatggaccccatcgaccgcgagttcgcgctggagcactttgttccaggcaag
cagtttattctcgtcgccaccgcagttgcagagcgcggcttggatattccgtatctgggc
ctcgtgatcaactatcgcttgcccaaccactacgaggcgtatgtgcatcgtatcggccgc
accggccgtgccgggcgcagcgggcgtgccgtgagctttttcactcgtggtaaggatgac
gacatcgctccagagctggtggaagggctggagcgcgcagagcagcgagtgccagaggag
ttgtacgaggttgcggagaaggtgcgtgcgctgcgcaagtctggtgatgcccggtacaac
agcggcttctttcgcggctaccgcgacgcgaaggcgcagcgcttcacggatcgtgacaag
aaggagaagatgcgcgaggctgcccgcgcggccgggttagagcagtttctcagctcttcc
tcagagtccgactcggatgcctcgagcgacgaaaatgcgaacatcactgcggtgccggtg
caatcgagagcccgcgccgcgtcggcgaaggaggcagcggcgaacgcgatggcgctgacg
ctgcaccgcggtgcgcacagcggcgcgctgacgttgtcctctgcgcaggaggaccgcatt
tccaaggcgctggcatttgcgcagaaaacaaccacggcgaccacgatggcggcggacgag
gcgacgatggtgcgctttcagagtgagtaccccatcaatgacttgcccgatgccgtgcgt
ggcaagttgcagagcggcacttttatgcgctccatcgcggaggagacggagacatcgttg
atccgaaagggtgtgtacttcgacccacgctacaagcactcgcggcggatgaaggagggg
gaaaagccgctgtatttgctgatagtgggacggtcgatggaggcggtgcgggcagctcgc
agcaaactcgacgaggtgaaggcagagctgctgagcaaacagaagaagacgggatctgtg
actggtgccacgatctag
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