Secundilactobacillus malefermentans: FGL90_08460
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Entry
FGL90_08460 CDS
T06836
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lmae
Secundilactobacillus malefermentans
Brite
KEGG Orthology (KO) [BR:
lmae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmae03019
]
FGL90_08460
03009 Ribosome biogenesis [BR:
lmae03009
]
FGL90_08460
Enzymes [BR:
lmae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FGL90_08460
Messenger RNA biogenesis [BR:
lmae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FGL90_08460
Ribosome biogenesis [BR:
lmae03009
]
Prokaryotic type
rRNA helicases
FGL90_08460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
QEA32212
LinkDB
All DBs
Position
1737092..1738447
Genome browser
AA seq
451 aa
AA seq
DB search
MSFNEFNLQPFLVEAIEELGFTEPTAVQKRLIPVIKSGKSVVGKSQTGSGKTHTFLLPIF
DKIDPELDEVQSLITTPSRELAYQIYEAAKQLASHSEKPIRVVNYVGGTDKARQQSKLHH
EQPQIVIGTPGRLLDLVKGGDLDIHTSRSFVVDEADMTLDMGFLSVVDQIASRLPNKLQM
MVFSATIPQKLQPFLKKYMSNPVMEEIPVTSVISPTIDNWLISTKGQNKNDIIYNLLTMG
EPYLALIFANTKSRVKEITKFLKQNGLKVAMIEGDLPPRERKRVMREVQNLDYQFVVATD
LASRGIDIDGVSHVINDGIPEDLDFFIHRVGRTGRKGMAGIAITLYTPDEESKITEIESM
GIKFQPKAIQNGEVVDSYDRNRRKQRSHGHEELDGALKAKINKTKKKVKPGYKKKIKKEI
NKDLLFKRRLEQRQKGRTERKRKKQDSNRYQ
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaacgaatttaacctgcaaccatttttagtggaagcaattgaagaattagga
tttacggaaccaactgcggttcaaaaacgacttattcccgtgattaaatctggaaaaagt
gttgttggtaaatcacagacgggtagcggaaaaacccatacctttttgttaccaattttt
gacaagatagatccagagcttgatgaggttcagtcactgattacaacgcccagtcgagaa
ttagcctatcaaatttatgaagcagcaaaacagttggcaagccacagcgagaaacccatt
agagttgtaaattacgttggtggtactgataaggcgcgccaacaatcgaagctccatcat
gaacaaccacaaatcgttatcggaacacctggacgactgcttgatttagttaagggtgga
gacttagacattcatacttctcggtcattcgtggttgatgaggctgatatgacgcttgat
atgggattcctaagcgttgtagaccagattgcgagtcggttacctaacaagctacaaatg
atggtcttttcggcgacaattccgcaaaagctgcaaccttttttgaaaaagtatatgtct
aatcctgtgatggaggaaattccggttacctctgttatcagtcctacaattgataattgg
ttgatttccacaaagggacaaaataagaacgatattatttacaacttgctgacaatgggt
gagccatacttagccttaatcttcgcaaatacgaagagtcgagttaaggaaatcactaag
tttctaaagcaaaatggcctcaaagttgccatgattgaaggcgatttaccgcctagagaa
cgtaagcgcgtgatgcgtgaagttcagaacctggattatcaatttgtagtggcaaccgat
cttgcttctcgtggaattgatatcgatggtgtttcccacgttattaacgatggaattcca
gaggatttagacttcttcattcatcgagttggacgaacgggccgaaaagggatggcagga
attgccattacactctatacgcctgatgaagaatcaaaaatcactgagattgaatcgatg
ggaattaagttccagccaaaggcaatccaaaatggtgaagtggttgattcttatgatcga
aaccgacgtaaacagcggagccacggccatgaggaacttgatggtgcattaaaagctaaa
atcaataagacaaagaaaaaagttaaaccaggatataagaagaagattaaaaaagagatt
aataaggatcttctatttaaacgccgtcttgaacaacgtcaaaaaggacggactgaaaga
aagcggaaaaaacaggattcgaatcgttatcagtaa
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