Listeria marthii: LAX80_004770
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Entry
LAX80_004770 CDS
T07828
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmar
Listeria marthii
Pathway
lmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAX80_004770 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmar03019
]
LAX80_004770 (rnjA)
Messenger RNA biogenesis [BR:
lmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAX80_004770 (rnjA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
UHP11095
LinkDB
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Position
complement(961391..963058)
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AA seq
555 aa
AA seq
DB search
MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYSYL
VKNKDKIKGLFITHGHEDHIGGVPYLLRDLNIPIYAGKLASALIRNKLEEHGLLRQTKIY
EYEEDDVFKFRKTSISFFRTTHSIPDTYGIVVKTPSGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNAEVPNFTMSERVVGESIKNIFRDVEGRIIFATFASNIYRLQQ
VVESSIETGRKIAVFGRSMESAMEIGKQLGYIQAPKDTFIDVHQLNKTPAGNVTILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTTSVNRTINLLYQAGAEVIHGKV
NNIHTSGHGGQQEQKLMLRLMKPKFFMPIHGEFRMQKIHAESAEECGVPEENSFIMANGD
VLALTSETAHVAGKIHAASVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKNSRV
MAGPDIISRGFIYMRESGNLIGEAQGLLTRHLNKVMEQKTTQWSEIKNEITDTLQPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaaaaataatgagacagctgttttcgcccttggtggactaggcgaaatc
ggtaaaaacacatatggcgtacaatttcaagacgaaattattctaattgatgcaggtatc
aagttcccagaagacgaacttctagggattgattatgttattcctgactacagttaccta
gttaaaaacaaagataagattaaaggacttttcatcacccatggtcatgaagatcacatc
ggtggcgttccttacctacttcgcgatcttaatatcccgatttacgctgggaaacttgcg
agtgcacttatccgtaacaaattagaagaacatggcttgcttcgtcaaaccaaaatttat
gaatatgaagaagatgacgtttttaaatttagaaaaacaagcatctctttcttccgcaca
acacatagtattcctgatacgtatggtattgttgtcaaaactccatctggtaacatcgtt
catacgggtgacttcaagttcgatttcacaccagttggcgaaccagctaaccttacaaaa
atggctgagattggtaaagaaggtgttctttgtttactatctgatagtacaaacgctgaa
gtaccgaatttcacgatgagtgaacgtgttgttggcgaaagtattaaaaatattttccgc
gatgtagaaggccgaatcattttcgccactttcgcatctaatatctatcgtttacaacaa
gtagtcgagtcctctatcgaaactggccgtaaaatcgctgttttcggtcgtagtatggaa
tctgctatggaaatcggtaaacaattaggttatattcaagcaccaaaagatacctttatt
gatgtgcatcagcttaataaaacacccgctggaaatgtgactatcctttgtacagggagt
caaggtgaaccaatggccgctctttctagaattgctaacggtactcaccgtcaaatccaa
attcaaccaggcgatacggtagtcttctcgtcttctccaattcctggtaatacaacgagt
gttaaccgcacaatcaatttactttatcaagctggcgcagaagttatccatggtaaagta
aacaatatccatacttctggccacggtggtcaacaagaacaaaaactaatgctacgtctt
atgaaacctaaattctttatgccaattcacggtgaattcagaatgcagaaaatccatgct
gagtccgctgaagaatgtggtgttccagaagaaaatagcttcattatggcaaatggtgat
gtgcttgctttaacgagtgaaacagctcatgttgcaggtaaaatccatgcggcaagcgtt
tatattgatggtagcggtattggtgatatcggtaatattgtccttcgtgatcgtcgcatt
ctttccgaagaaggcctcgtaatcgtcgttgtgtccattgatatgaaaaactctcgtgta
atggcgggacctgatattatttcacgcggtttcatctatatgcgtgaatccggtaatcta
atcggagaagctcaaggcctcctaacgcgccacctaaacaaagtaatggaacaaaaaaca
acgcaatggtctgaaattaagaacgaaattacagatacgttgcaacctttcttatatgaa
aaaacaaaacgacgcccaatgattttaccaataatcatggaagtatag
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