Listeria monocytogenes CLIP 80459 (serotype 4b): Lm4b_02519
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Entry
Lm4b_02519 CDS
T00898
Symbol
rho
Name
(GenBank) Putative transcription terminator factor rho
KO
K03628
transcription termination factor Rho
Organism
lmc
Listeria monocytogenes CLIP 80459 (serotype 4b)
Pathway
lmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lm4b_02519 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmc03021
]
Lm4b_02519 (rho)
03019 Messenger RNA biogenesis [BR:
lmc03019
]
Lm4b_02519 (rho)
Transcription machinery [BR:
lmc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Lm4b_02519 (rho)
Messenger RNA biogenesis [BR:
lmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Lm4b_02519 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
NACHT
AAA_25
AAA_22
AAA
Spore_III_AA
Mor
Motif
Other DBs
NCBI-ProteinID:
CAS06274
LinkDB
All DBs
Position
complement(2598190..2599461)
Genome browser
AA seq
423 aa
AA seq
DB search
MAKLSIAYLESLTIKEIYALAKEHKITYYSKLTKRELIFALLKSNAEKEGFFFMEGVLEI
IPNEGFGFLRPINYSSSSEDIYISASQIRRFELRTGDKVSGKVRPPKENERYFGLLHVEA
VNGENPEVAKERVHFPGLTPLYPDRQIHLETGKNPISTRTIDLISPIGFGQRGLIVAPPK
AGKTVLLKEIANAITTNHPESELIVLLIDERPEEVTDIERSVKADVVSSTFDEVPENHIK
VAELVLERAMRLVEQKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRQLAERRVFPAIDMR
RSGTRKEELLLSKERLEQLWKIRKAMPKQSDGLDISERFVRYLKKTENNEAFYELLQEEM
FKK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggctaaactgtccattgcatacttagaaagtttaacaatcaaagagatatatgcctta
gcaaaagaacacaaaattacttactatagtaaattaacaaaacgagaattgatttttgct
ttattaaaatcaaacgcagaaaaagaaggatttttcttcatggaaggtgtattagaaatt
attccaaatgaaggttttggcttcttacgccctatcaactattcatctagttcggaagat
atttacatctctgcttcccaaattagacgtttcgagttaagaactggggataaggtttct
ggaaaagttcgtcctccgaaagaaaatgaacgttactttggcttactccatgttgaggct
gtcaatggagaaaatcctgaagtggctaaagaaagagtgcatttcccaggactaacaccg
ctttatccagatcgtcaaattcatttagaaacaggcaaaaatcctatttccacaagaacg
attgatttgatttcaccaattggttttggtcaacgcggacttattgtagctccaccaaaa
gcaggtaaaacggtattacttaaagaaattgcgaacgcgattactactaatcatccagag
tcagaattgattgtcttgttaattgatgagcgtccggaagaagtaactgatatcgaacgt
tctgtaaaggccgatgttgtcagttccacatttgatgaggtacctgaaaatcacattaaa
gtagcagaactggttcttgaacgagcgatgcgtttagtagaacaaaaacgcgatgtggtc
attttaatggatagtattacgcgacttgcgagggcctataacctagtgattccgccaagt
ggtcgaacactttcaggggggattgatcctgctgcattccatagaccgaagcgcttcttt
ggagctgctcgtaatattgaagagggtggaagcttaaccattcttgccacagcattagtt
gacacgggttctcgaatggacgatgttatttacgaagaattcaaagggacaggcaacatg
gagttacatcttgatcgccaacttgcagaacgtcgcgtttttcctgctatcgatatgcgt
cgctccggcacaagaaaagaagaattactactatccaaagagcgtcttgaacaactctgg
aaaatccgcaaagcgatgccgaaacaaagcgatggactagatatttcagaacgatttgta
cgttatttgaagaaaacggagaataatgaagctttttatgagttactacaagaagagatg
tttaaaaaataa
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