Leisingera methylohalidivorans: METH_05285
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Entry
METH_05285 CDS
T02961
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lmd
Leisingera methylohalidivorans
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmd03019
]
METH_05285
Enzymes [BR:
lmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
METH_05285
Messenger RNA biogenesis [BR:
lmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
METH_05285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
ResIII
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHD00215
UniProt:
V9VSB2
LinkDB
All DBs
Position
complement(1025380..1027839)
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AA seq
819 aa
AA seq
DB search
MTRLPIEDALPELLDALRKRGRAVLQAPPGAGKTTRVPLAMLEAGLTAARIVMLEPRRLA
ARAAAERMAETLGERPGETVGYRVRGDAKVSKSTRIEVVTEGILTRMLQSDPDLPGVGAV
IFDEFHERSLNADLGLALCLEVAGALRDDLILMAMSATLDAGPVAALMDAPMVTSEGRSY
PVETRWLDRPLPAQARRADALADLVVQAEKDTRSADSDQGGGILVFLPGEGEIRRAAGAL
AKRLPGHCHVRPLFGALPFADQRAAIQPEKDGRKVVLATSIAETSLTIQDIRVVVDMGQA
RRARFDPGSGMSRLVTEKVTRAEATQRRGRAGRVAEGVCYRLWTKGEEGALMAFPPAEIE
SADLTDLALELALWGAAPEELSFLSQPPAGALSEAQALLQMLGALTAQGRITKHGKALSA
LPLHPRLGHMLLTAGPAAAPLAALLGERDPLRGAPADLSLRLEALKDPKGFERKRPYQLN
RPAVERIKSEARRLERQAGRGTGMLSPAAMAALAYPDRVGQRRKGDAPRFVLSGGKGAVL
ESSDTLAGAPFIVALDTDGNPREARIRMAAQISLGEIRALFADQTAWNDVCGWSKRDRRV
VSRQQERFGAIVLDDRIWKEVPQDAVAHAMLDGVRDLGLRLTGAAARLAARVELVRAEGH
ELPDFTIPGLMDQLEDWLLPMLDGVKSAEEWKRFDLLPALRAALNWEQTQLLDREAPGSF
ITPLGRKIPIGYDGEVPEISVRLQELFGVSRHPAVGGVPLKITLLSPAQRPIQITRDLPG
FWAGSYADVRKDMRAQYPRHPWPEDPTREDPTLRAKRRK
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgaccagattgccgatcgaagacgcccttcctgaattgctggacgccctgcgcaagcgg
ggccgtgctgtgctgcaggcgccgcccggcgcgggcaagaccacccgggtgccgctggcc
atgctggaggccgggctgaccgcggcgcggatcgtgatgctggagccccgccgcctggcg
gcgcgcgcggccgccgagcggatggcggaaacgctgggcgagagacccggggaaaccgtc
ggctaccgggtgcgcggcgatgccaaagtgtcgaaatccacccgcatcgaagttgtgacc
gaaggcatcctgacccggatgctgcagtcggacccggatctgcccggcgtgggcgcggtg
atctttgatgaattccacgaacggtcgctgaacgcagacctgggccttgccttgtgtctt
gaagtggccggcgcgctgcgcgatgacctgatcctgatggcgatgtcggcaacgctggat
gccggaccggtggcggcgctgatggacgcgccgatggtcacctccgaaggacgcagctat
ccggtggaaacccgctggctggaccgtcccctgcccgcccaggcccgccgtgcggacgcg
cttgcggatctggtggtgcaggcggaaaaggacacccgcagcgcagacagcgatcagggc
ggcggcattctggtgttcctgcccggcgagggcgagatccgccgtgcggccggcgccctg
gccaaacgcctgcccggccattgccatgtccggcccctgttcggcgccctgccctttgcc
gatcagcgtgccgccatccagccggaaaaggacgggcgcaaggtggtgctggcaacctcg
attgccgagacctcgctgaccattcaggacatccgggtggtggtggatatgggccaggcg
cggcgcgcgcggttcgatcccggctccggcatgtcgcggctggtaacggagaaagtcacc
cgcgccgaggccacccagcgccggggccgcgcgggccgggttgccgagggcgtctgctac
cggctgtggaccaagggcgaggaaggcgcgctgatggcgttcccgccggccgaaatcgaa
agcgccgaccttactgatctggcgctggagctggccttgtggggcgcggcaccggaggag
ctgtcgtttctcagccagccacccgccggcgcgttgagcgaagcgcaagcgctgctgcag
atgctgggcgccttgactgcgcaggggcggatcaccaaacacggcaaggcgctgtcggcg
ctgccgctgcacccccgacttggccatatgctgctgaccgcaggcccggctgcagcgccg
ctggcggccctcctgggcgagcgcgacccgttgcgcggggcgcctgccgatctgtctctg
cggctggaggcgctgaaagatcccaaggggtttgagcgcaagcgcccctaccagctgaac
cgcccggcggtggaacggatcaaaagcgaggcccggcggctggagcggcaggcagggcgc
ggcaccggcatgctgtccccggcggcgatggccgcgctggcctatcccgaccgcgtcggt
cagcggcgcaagggcgacgcgccgcggtttgtgctgtccggcggcaagggcgcggtgctg
gaaagcagcgacacgctggcgggcgctcctttcatcgtggcgctggacaccgacggcaac
ccgcgtgaggccaggatccggatggcggcgcagatctcccttggcgaaatccgcgcgctg
tttgcggatcagaccgcctggaacgatgtctgcggctggtccaaacgcgaccgccgggtg
gtgtcgcgccagcaggagcggttcggcgccatcgtgctggacgaccggatctggaaagag
gttccgcaagacgccgttgcccacgccatgctggacggtgtgcgcgacctgggcctgcgg
ctgaccggcgccgctgcgcggctggcggcgcgggtggagttggtgcgggctgagggccat
gagctgccggatttcaccatccccggcctgatggaccagctggaagactggctgctgccg
atgctggacggggtgaaaagcgccgaagagtggaagcgtttcgatcttctgcccgcgctg
cgcgccgccctcaactgggagcagacacagctgctggaccgcgaggcgccgggcagcttc
atcacgccgctgggccgcaagatcccgatcggctatgacggcgaggtgccggaaatctcg
gtccgcctgcaggagctgttcggcgtcagccgccaccctgccgtgggcggtgtgccgctg
aagatcacgctgctgtcgccggcccagcgcccgatccagatcacccgcgacctgcccggc
ttctgggcggggtcatacgcggacgtgcgcaaggacatgcgcgcgcaatatcccaggcac
ccctggcccgaagaccccacccgcgaagacccgacgctgcgcgcaaaacgccggaaatag
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