Leishmania mexicana: LMXM_06_0260
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Entry
LMXM_06_0260 CDS
T02288
Name
(RefSeq) putative 5'-3' exonuclease
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
lmi
Leishmania mexicana
Pathway
lmi03008
Ribosome biogenesis in eukaryotes
lmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LMXM_06_0260
09123 Folding, sorting and degradation
03018 RNA degradation
LMXM_06_0260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmi03019
]
LMXM_06_0260
03009 Ribosome biogenesis [BR:
lmi03009
]
LMXM_06_0260
03016 Transfer RNA biogenesis [BR:
lmi03016
]
LMXM_06_0260
03036 Chromosome and associated proteins [BR:
lmi03036
]
LMXM_06_0260
Messenger RNA biogenesis [BR:
lmi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
LMXM_06_0260
mRNA degradation factors
5'-3' decay
5' exonucleases
LMXM_06_0260
Ribosome biogenesis [BR:
lmi03009
]
Eukaryotic type
Pre-60S particles
RNases
LMXM_06_0260
Transfer RNA biogenesis [BR:
lmi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
LMXM_06_0260
Chromosome and associated proteins [BR:
lmi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
LMXM_06_0260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
SH3_12
XRN1_D2_D3
Trypan_PARP
ORC2
Motif
Other DBs
NCBI-GeneID:
13453210
NCBI-ProteinID:
XP_003872038
UniProt:
E9AKQ4
LinkDB
All DBs
Position
6:complement(82866..87449)
Genome browser
AA seq
1527 aa
AA seq
DB search
MGVPKFFRWAAERFPSIITPFKDSPPPVDNLYLDINGIIHNCTHPNDVDATRRSPTEKEM
IQAMFIYLEKLFNAIQPRKYFLLAVDGVAPRAKMNQQRQRRYRAGYEMMIARQEALAMGE
EVPEEKDVFDSNCITPGTPFMVRVSKEFQYFITMKLSTDPAWQGCQIIFSGHDCPGEGEH
KIVDFIRRRKMQPNYDPNETHCMYGLDADLVMLALATHEPHFVLLREVVTFGPGSRKERE
RQEEDEAKGLVKDKAYHKADEFVLLHINVFRDYLQLEVKGYLAKAKSSASMDFERVIDDF
VFMCFFIGNDFLPTLPTIGINDGSIPALLRIYVDNMLSKNKYLTHKGEIDWRNAEVWLNE
VGKLEFETLRRRQQEEAEFQKNRARRDPTHEVDATSVMPITSILEFKQRYYGEKHGFAGG
WDANSADMRRLREHYVEGLMWVMHYYYQGVPSWKWFFPHYYAPMASDMVNLPAIAARVSF
ELGKPFQPHQQLLAVLPPMSYLSMPKAYWPLLRSPSSPLAKYLPEHIVIDREGARAPWEG
IVLIPFIDERTLLAAYESVQKNVSPEDAANNVNGPPLRFCYDGKMPPYELEDGMFGSLRN
VLVRRETYAFPPIDKFTPQLCPGVHVGTRQLEGFSTLQSKRDLIQPIFEAGVVSIFGRPT
KNDSLILQMRDFFKAKSVDQVATLVGKEVLVGFPHYKRARIASLKDVHKSITASYSKEGT
FSGTEEHKNNREESAAFVKEADTHARFMKSQLGLGVEQVDVLVYVHRFNGMQVTRKGHIE
RHFATTWTCYPIHLICTMDNINMQEDSRYVERDRSEGDSAFGARCVYIGPQPKSKKSQMD
VYGSCGTVVTAGQHDTTTQQGDQMTVRLKVFQEPLRLPAELLQFAAQRNWTALPQVAISL
DILPHTLTSICSSIVTSPQFGSRELGLCLKFTGRCIAKVGYAKLVQHSLNPWYVGNKDIF
ARMEKDMEDIGYHLEMGEKGDFAGNSSSNRGGSGTWYFSRDAQELIRDYVKRFRPLIQYI
EAGGVNSNSVEPQQFLTGPWRDRDVDDVLTEIETFLIESGLRETPMITATEEAFPQQLLE
QLEASLQEQQNRSFKELSLRQVSRSQLYFPVTRSSCGHLVPLPLPQEQTFYLGSRVANCR
ATGIVPFGTQGTIVRLLASGREAEIVYDTPFTGGTRLDGRLKDTRAAITKLSALLVLKST
DVAQPQPQAQPQSQPQPQSQPQPQSQPQPQSQPQPQSQPQLEMRAAAAAATNGSAKLREL
EFLLQANGIHVDPSGKSTVSPPSLPAAFQNPTIAAARAAPADSGASHSSTAGASTSVVPR
PRSAVAAEQTPAPATLGKRATPASATAHLSSTSSVTPITRETHGSPASLKITAAPGSSGI
SLQDLAKHLPVSTSQRSPTTVASPPGHAPASAAVAATTTAAPSGIAIPAPKSAQQHQHPA
QPASPAATTAVASPSQSSESNETPPGSNTRRKSRDLHVIPDDFVSGRFKIKYTNTGSLFR
SWLDTFTAEAVRKTLTELEAEEKANPM
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgcccaagttcttccgctgggcggcggagcgcttcccctccatcatcaccccc
ttcaaggactcgccaccgccggtggacaacctctacctcgatatcaatggtatcatccac
aactgcacgcacccgaacgatgtcgacgcgacgcggcgcagtccgacagagaaggagatg
attcaggcgatgttcatctatctggagaagctcttcaacgccatccagccgcgcaagtac
tttctgcttgccgtcgacggtgtcgcgccgcgcgcgaaaatgaatcagcagcgccagcgc
cgctaccgtgccggttacgagatgatgatcgcgcgtcaggaggcgctcgcgatgggcgag
gaggtgccggaggagaaggacgtgttcgacagcaactgcatcacccctggcaccccgttc
atggtgcgcgtgagcaaggagtttcagtacttcatcacaatgaagctgtccactgatccg
gcgtggcaggggtgccagatcatcttctccggccacgactgccccggcgagggtgagcac
aagatcgtcgattttattcgccggcgcaagatgcagcctaactacgaccccaacgagacc
cactgcatgtacggcctcgacgccgatctcgtcatgctagcgctcgccacgcacgagccg
cactttgtactgctgcgcgaggtggtcacgttcggccccggctctcgcaaggagcgggag
cggcaggaggaggatgaggcgaagggcctcgtgaaggacaaagcgtaccacaaggcggac
gagtttgtgctgctgcacatcaacgtcttccgcgactacctgcagctggaggtgaagggc
tacctggcgaaggcgaagagcagcgcaagtatggactttgagcgagtgatcgacgacttc
gtcttcatgtgcttctttatcggcaacgacttcctgccgacgctgccgaccatcggcatc
aacgatggcagcataccggcgctcctgcgcatctacgtggacaacatgctcagcaagaac
aagtacctgacgcacaagggcgagatcgactggcgaaacgccgaggtgtggttgaacgag
gtcggcaagctcgagttcgagacgctgcgccgacgtcagcaggaggaggcggagttccag
aagaaccgcgctcgccgcgaccctacccacgaggtggacgccacctccgtaatgcctatc
acgtcgatcctggagttcaagcagcgctactacggcgaaaagcacggcttcgctggcggc
tgggacgcgaacagcgcagacatgcgccggctgcgggagcactacgtggaggggctcatg
tgggtcatgcattactactatcaaggcgtgccttcatggaagtggttcttcccgcactac
tatgcacccatggcgagcgacatggtgaatctccccgccatcgccgcccgtgtctcgttc
gagctcggcaagcccttccagccgcaccagcagctgctggccgtgctgccacccatgtca
tacctgtccatgcccaaggcctactggcccctgctgcgcagcccgagtagcccgctcgcc
aagtacctgcccgagcacattgttatcgaccgcgaaggcgcgcgcgcgccgtgggagggc
attgtgctgatccccttcattgacgagcgcacgctgctcgccgcctacgagtcggtgcag
aagaacgtcagccccgaggacgccgcaaacaacgtgaatggccccccgctgcggttctgc
tacgacggcaagatgccgccatacgagctggaggatgggatgttcgggtctctccggaac
gtcctcgtgaggcgcgagacgtacgcattccctcccatcgacaagttcactccgcagctg
tgccctggcgtgcacgttggcacgcggcagctggagggcttcagcaccctccagtcgaag
cgcgacctaatccagccgatcttcgaggctggagtcgtgtcgatctttggccgtcccacc
aagaacgacagtctcatcttgcagatgcgcgacttcttcaaggccaagtcggtcgaccag
gtggcgactctcgtcggcaaggaggtgctcgtcggcttcccgcactacaagcgtgcccgc
atcgcctccctcaaggatgtgcacaagtccatcactgcttcgtacagcaaggagggcacc
ttcagcggcaccgaggagcacaagaacaaccgtgaggagtcggctgccttcgtgaaggag
gcggacacgcacgcacgcttcatgaagtcgcagctgggccttggcgtggagcaggtcgac
gtcctcgtgtacgtgcaccgcttcaacggaatgcaggtgacgcgcaaggggcacattgag
cgacacttcgccaccacctggacgtgctacccaattcatctgatctgcaccatggataac
ataaacatgcaggaggacagccgttacgtcgagcgtgaccgcagcgaaggtgacagcgcc
tttggtgcccgctgcgtctacatcggtccgcagcccaagtcgaagaagtcgcagatggac
gtgtacggcagctgtggcaccgtcgtgacggctggccagcatgacacgacgacgcagcag
ggcgatcagatgacggttcgcctcaaggtgttccaggagccgctgcggctgccggcggag
ctgctgcagtttgccgcgcagcgcaactggacggcgctgccgcaggtggcgatcagtctc
gacattttaccgcacaccctgacgagcatctgcagctccatcgtcacgtcgcctcagttt
ggctctcgcgagctggggctgtgcctaaagttcaccgggcggtgcatcgccaaggtcggg
tacgcgaagctggtccagcacagtctgaacccgtggtacgttgggaacaaggacatcttt
gcccgcatggaaaaggatatggaggacattggctaccatttggagatgggcgagaagggc
gacttcgccggtaattcgagcagcaaccgtggtggcagcggcacatggtacttctcccgc
gacgcgcaggagttgatccgcgactatgtgaagcggttccgcccactcatccagtacatc
gaggcgggcggcgtaaactcgaacagcgttgagccgcagcagttcctgacgggcccgtgg
cgcgacagggatgtcgacgacgtgctaacggagatcgagacgttcttaatagagtcgggg
ctgcgcgaaacgccaatgattacggctacggaggaggcctttccgcagcagctgctcgag
cagcttgaggcgtcgctgcaggagcagcagaaccgcagcttcaaggaactctcgctgcgg
caggtaagccgcagccagctctactttcctgtcacgcgcagcagctgcggccatctcgtg
ccgctgccactgccgcaggagcagactttctacctgggctcgcgggtcgcgaactgccgc
gccacgggcatcgttcccttcggcacgcaaggcacgatcgtgcgcttgctggccagcggg
agggaagcagaaatcgtgtacgatacccccttcacgggaggcacgcgactcgatggccgc
ctcaaggacactcgcgccgccatcacgaagctgtcggcgctgcttgtgctcaagtcgacg
gatgtggcgcagccacagccacaggcgcagccgcagtcacagccgcagccgcagtcacag
ccgcagccgcagtcacagccgcagccgcagtcacagccgcagccgcagtcacagccacag
ctggaaatgagggccgctgcggccgccgccacaaacgggtcggccaagctgcgggagctg
gagttcctcctgcaggcgaacggcattcacgtagacccctcgggcaagtccacggtgtcg
ccgccatcgctgcctgcagcgtttcagaaccccacgattgccgcggctcgcgctgccccg
gccgactctggtgcgagccatagcagcactgctggcgccagtacaagcgttgtgccgcgg
cctcgcagtgccgttgcggcggagcagacgccggcaccagcgacactaggcaagcgcgcc
acccctgcctccgccaccgcccacttgtcctccacgtcttcggtgacgccaatcacgaga
gagacccacgggagtcccgcgagcctcaaaatcacggctgccccagggagcagcgggatc
agcctccaggacttggccaaacacttgccggtctccacatcccagcgctcgcccaccact
gtcgcctcgccgcctggtcacgctccagcgtcggctgcagtggcggcaacaacgacagcg
gcgcccagcgggatcgccatcccagcccccaagtctgcgcagcagcaccagcacccggcg
cagcccgcgtcgccggcggcgacgacagctgtggcctcgccaagccaaagcagtgagtcg
aatgagacgccccccggctcgaacacgcgccgcaagtcgcgcgacctgcatgtcattccg
gacgacttcgtcagtggacggttcaagatcaagtacacgaacacgggctcgttgttccgg
agctggctggacaccttcacggcggaggcggtgcgcaagaccctcaccgagcttgaggcg
gaggagaaagcgaatcccatgtga
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integrated database retrieval system
