Luteipulveratus mongoliensis: VV02_08845
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Entry
VV02_08845 CDS
T04024
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmoi
Luteipulveratus mongoliensis
Pathway
lmoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VV02_08845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmoi03400
]
VV02_08845
Enzymes [BR:
lmoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VV02_08845
DNA repair and recombination proteins [BR:
lmoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VV02_08845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Glyco_tran_WecG
RecG_dom3_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKU15937
UniProt:
A0A0K1JGU0
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All DBs
Position
1837050..1840643
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AA seq
1197 aa
AA seq
DB search
MASLTPLLDVLVADPAVRRVLDLVGTASVVDVAASSGIRGPLLAAITDRADRRTPVLAIT
ATGRESQDLAASLRCFLPAEAVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPDADD
AAYGEIRVVVASVRALIQPIAKGLGELVPVSLRVGDERPLEDIVEALAAAAYTRTDMVER
RGEFAVRGGILDVFPPTEEHPLRIELWGDTVEEVRWFKVADQRSLENAEHGLWAPPCREV
LLTDTVRARAAELAEELPGVADLLHKVAEGIAVEGMESLGPALLDDGMETLIDALPKGTH
VVLSDPERVRTRAHDLVATSAEFLEASWANAAAGNAIPIDLQGTLGTASYWSLADIREQS
IELGHPWWSLSSFASDEDLAEFVDDELPGERVTIPTDEVPAYRSNTDAAVEDLQKWVHDG
VCVLVVTEGHGLAQRVTEVLHEHDVSAHSLDALTPGAVEITTGSLGRGFALPSSNLVVLT
ESDLTGTAGQGSTKDMRKMPSRRRKVVDPLQLRPGDFVVHEQHGVGKFVEMMQRTVAGAT
REYLVLEYAPSKRGQPGDRLFVPTDQLDQVTRYVGGEMPSLNKMGGSDWQTTKSRARRHV
RQIAGELIQLYSARMATPGHAFAKDTPWQRELEDAFAYIETPDQLSSIEEVKADMEKTVP
MDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVKQHQQTFSERYAGFPVVVR
SLSRFQSDREAREVVEGLADGTVDLVIGTHRLLSKEVKFKDLGLVVVDEEQRFGVEHKEQ
LKQLRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGGYEEKQITAA
IRRELMRDGQVFFIHNKVQSIEKTATRLRELVPEARIVTAHGKMSETRLEDVVVDFWERR
ADVLVCTTIVETGLDIANANTLIVERSDVLGLSQLHQLRGRVGRGRERAYAYFLFPPEKP
LTETAHDRLETIASNTDLGAGMQIAMKDLEIRGAGNMLGGEQSGHIAGVGFDLYVRMVGE
AVADFRGDESVDQMAKEVKIELPVDAHLPHDYVPGERLRLEAYKKLATVQDEAGLQEIID
ELIDRYGQPPEPVLHLIEVARLRTIARQAGVSDIAVQGKFVRFGPVDLRESQTMRIQRIY
KGTLVKDNLHQVLVPVPMTAPVGGKPLRNTDVLQWAGQLVRAVLLDDVASAAAAATS
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcctcaccccgctgctcgacgtcctggtcgccgatccagccgtacgccgggtg
ctcgacctggttgggacggcgtccgtggtggacgtggcggcctcttcgggcatccgcggc
cctttgctcgcggcgatcactgaccgagccgaccgccgtacgccggtgctcgccatcacc
gcgaccggccgcgagtcccaggacctcgccgcgtcgttgcggtgcttcctgcccgccgag
gccgtcgtggagttccccagctgggagacgcttccgcacgagcggctcagtccgcgcagc
gacacggtcggccgccggctcgcggttctgcgccggctggcgcacccggatgccgacgac
gcggcgtacggcgagatccgagtggtcgtcgcctccgtccgcgcgctgatccagccgatc
gccaagggtctgggtgagctcgtgccggtgtcgctccgcgtgggtgacgagcggccgctc
gaggacatcgtggaggcgctggccgccgcggcctacacccggaccgacatggtcgagcga
cgcggtgaattcgcggttcgcggagggatcctcgacgtcttccctcccacggaggagcac
ccgttgcggatcgagctctggggcgacacggtcgaagaggtccgctggttcaaggtcgcc
gaccagcggtcgctcgagaacgccgagcacgggctgtgggcgccaccgtgccgtgaggtg
ctgctcaccgacaccgtgcgcgcacgtgcggccgagctggccgaagagcttcccggcgtc
gccgacctgctgcacaaggttgccgagggcatcgcggtcgagggcatggagtcgctcggc
ccggcgctgctcgacgacggcatggagaccttgatcgacgcgctgcccaagggcacgcac
gtcgtgctgagtgatcccgagcgcgtgcgcacgcgagcccacgacctggtcgcgacgagc
gccgagttcctcgaggcgtcctgggccaatgccgctgcaggcaatgcgattccgatcgat
ctgcagggcacgctgggcacggcgtcctactggtcgctcgccgacatccgcgagcagagc
atcgagctcggacacccgtggtggtcgctgtcgtccttcgcttctgacgaggacctcgcc
gagttcgtggacgacgagctgccgggggagcgggtgacgattcccaccgacgaggtgccg
gcgtaccgctccaacactgacgctgcggtcgaggacctgcagaagtgggtgcacgacggc
gtgtgcgtcctcgtggtgaccgagggccatggtctggcgcagcgcgtcacagaggtgctg
cacgagcacgacgtgtccgcccacagcctcgatgccctcacgccgggagccgtcgagatc
acgaccggttcgctggggcgcggattcgccctgccctcaagcaatctcgtggttctcacc
gagtccgacctcaccggcaccgccggccagggcagcaccaaggacatgcgcaagatgccg
tcgcggcggcgcaaggtcgtcgacccgctgcagctgaggcccggcgacttcgtggtccac
gagcagcacggcgtcggcaagttcgtggagatgatgcagcgcacggtcgcgggtgcgacg
cgcgaatacctcgtgctcgagtacgccccatccaagcgggggcagccgggcgaccgcctg
ttcgtgccgaccgatcagctcgaccaggtgactcgttatgtcggcggcgagatgccgtcc
ctcaacaagatgggcggatccgactggcagacaacgaagtccagggcgcgccgtcacgtc
cggcagatcgccggtgagctgatccagctctactccgcacggatggccacgccgggccac
gcgttcgcgaaggacaccccgtggcagcgcgagctcgaggacgcgttcgcctacatcgag
acgcccgaccagctctcctccatcgaggaggtcaaggccgacatggagaagaccgtcccg
atggaccggttgatctgtggcgacgtgggttacggcaagaccgagatcgcggtgcgggcg
gcgttcaaggcaatccaggacggcaagcaggtcgcggtgctcgtgccgacgacgctgctc
gtcaagcagcaccagcagaccttctccgagcgctacgccgggttccccgtggtcgtacgc
tccctgtcccgttttcagagcgaccgcgaggcccgggaggtcgtcgagggtctggccgac
ggcaccgtggacctggtcatcggcacccatcggctgctctcgaaagaggtgaagttcaag
gacctcggcctcgtcgtggtggacgaggagcagcgcttcggcgtggagcacaaggagcag
ctcaagcagctgcgcaccgcggtcgacgtgctcgcgatgtcggcgaccccgatcccgcgc
acgctcgagatggcggtcacagggatccgtgagatgtctactctcgcaacgcctcccgag
gagcggcacccggtcctgacgttcgtcggtggctacgaggagaagcagatcacggccgcg
atcagacgcgagctgatgcgcgacgggcaggtcttcttcatccacaacaaggtccagagc
atcgagaagacggccactcggctgcgcgagctcgtgcccgaggcgcgcattgtgacggcc
cacggcaagatgagcgagacgcgcctcgaggacgtcgtcgtcgacttctgggagcggcgg
gcggatgtgctcgtctgcaccacgatcgtggagaccgggctcgacatcgccaacgccaac
accctgatcgtcgagcgctccgacgtgctcggcctctctcagctgcaccagctgcgtggc
cgagtcggccgtggccgggagcgcgcgtacgcctacttcctcttcccgcccgagaagccg
ctcaccgagaccgcgcacgaccggctcgagaccatcgccagcaacaccgacctcggtgcc
ggcatgcagatcgcgatgaaggacctcgagatccgaggagccggcaacatgctcggcggt
gagcagtccggccacatcgcgggcgtcggtttcgacctctacgtccggatggtcggcgag
gccgtcgctgacttccggggcgatgagtccgtcgaccagatggccaaagaggtcaagatc
gagctgccggtcgacgcccacctgccccacgactacgtgccgggggagcggctgcggctg
gaggcgtacaaaaagctggcgaccgtgcaggacgaggccgggctgcaggagatcatcgac
gagctcatcgaccgctacgggcagccgccggagccggtgctgcacctcatcgaggtggct
cggctgcggaccatcgcccgtcaggcgggggtctccgacatcgcggtgcagggcaagttc
gtccggttcggtccggtcgacctgcgcgagagtcagaccatgcggatccagcggatctac
aagggcacgctggtcaaggacaacctgcatcaggtccttgtgccggtcccgatgacggca
ccggtcggcggcaaaccgctgcgcaacaccgacgtgctgcagtgggccggccagctggtg
cgcgccgtcctcctggacgacgtcgcctccgccgcagccgccgccacatcctga
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