Ligilactobacillus murinus: CPS94_05520
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Entry
CPS94_05520 CDS
T07549
Name
(GenBank) ATP-dependent helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lmur
Ligilactobacillus murinus
Brite
KEGG Orthology (KO) [BR:
lmur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmur03019
]
CPS94_05520
03009 Ribosome biogenesis [BR:
lmur03009
]
CPS94_05520
Enzymes [BR:
lmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPS94_05520
Messenger RNA biogenesis [BR:
lmur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPS94_05520
Ribosome biogenesis [BR:
lmur03009
]
Prokaryotic type
rRNA helicases
CPS94_05520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AWZ38440
LinkDB
All DBs
Position
complement(1101924..1103255)
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AA seq
443 aa
AA seq
DB search
MNKTFKDFNLKPFLNEALTEIDFKTPTEVQQRLIPVIKKGKSVVGQSQTGSGKTHTFLLP
IFNAIDPAIHEVQAVITTPSRELAYQIYGAAKQLAKHSETEILVQNYVGGTDKLRQIEKL
KHHQPQIVIGTPGRILDLMRSNALDVHNAHYLVVDEADMTLDLGFLKETDAIASALPKDL
QMLVFSATIPQKLKPFLRKYMNDPVVEVVENKTVISPTIDNWLLSTKGRDKKQLIYQLLT
LGEPYLALVFANTKERADELTTYLRHQGLKVAKIHGGIQPRERKRLMREIQNLEYQYVVA
TDLAARGIDIEGVSHVINDDLPEDLEFFVHRVGRTGRNNLKGIAITLYVPSEEAQIEELE
KMGVTFVPKALKNGEIVDSYDRNRRQKRRTRQESLDPKMIGMVKKAKKKRKPGYKNKIKR
ALKRDAQQKRKIARRQERKNQRS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaataagacatttaaagattttaacttaaaacccttcttaaatgaagcgttgactgag
atcgattttaaaacaccgactgaagtgcaacaacgcttgatcccagtgatcaaaaagggc
aaaagtgttgtcggacaatcgcaaacagggagtggtaagacccatactttcttacttccg
atttttaatgcgatcgatccagctatccatgaagtgcaagctgttattacgaccccaagt
cgagaattggcttatcagatctatggcgctgctaagcaattagctaagcattctgaaact
gagatcttagtccaaaactatgtcggtgggactgataaattacgtcagatcgaaaaatta
aagcaccatcaaccacagatcgtgatcgggactccagggcggatcttggatctgatgcgt
tcaaatgctttggatgtgcataatgcgcattatttagtcgttgatgaagctgatatgaca
ttagacttaggtttcttaaaagagaccgatgcgatcgcgtcagctttgccaaaggatctt
caaatgctggtcttttcagcaacgatcccgcaaaagttaaaaccattcttacgaaaatat
atgaatgaccccgttgttgaagtggtggaaaataaaacagttatcagtcctacgatcgat
aattggttactttcgactaagggacgcgataaaaagcaattgatctatcaattgctgacg
ctgggcgaaccatatttggcattagtttttgctaacaccaaagaacgggctgatgaattg
acgacttatttgcgtcatcaaggcttaaaagtggctaagatccatgggggtatccaacca
cgggaacgcaaacgtttgatgcgtgagatccaaaacctcgaatatcaatatgtggttgcg
accgatctagcagccagggggatcgacatcgaaggtgtttcccatgtgatcaatgatgat
ctaccagaagaccttgaatttttcgtccatcgtgtcgggcggactgggcgtaacaacctt
aagggcatagcgatcacattgtatgttccaagcgaggaagctcagatcgaagaattagaa
aagatgggggtcacttttgtccctaaagcgctcaaaaatggggagatcgtggactcttat
gaccgcaatcggcgccaaaaacgtcggactagacaagaaagtcttgatcctaagatgatc
gggatggtcaaaaaggctaaaaagaagcgcaaaccgggctataagaataagatcaagcgt
gcgttaaaacgtgatgcacaacaaaaacgcaagatcgcacgtcgacaagaacgtaaaaat
caacgttcgtaa
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