Lagopus muta (rock ptarmigan): 125691384
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Entry
125691384 CDS
T09141
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03013
Nucleocytoplasmic transport
lmut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125691384 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
125691384 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125691384 (THOC1)
03041 Spliceosome [BR:
lmut03041
]
125691384 (THOC1)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125691384 (THOC1)
Spliceosome [BR:
lmut03041
]
Complex C
Other components
EJC/TREX
125691384 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125691384 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
125691384
NCBI-ProteinID:
XP_048796656
LinkDB
All DBs
Position
3:complement(46938798..46959541)
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AA seq
680 aa
AA seq
DB search
MASSARVAERRSAGAMSPPLLFSLPEARHRFTISTREALHHKTLKPLLNAFNQIPGSENE
KKCTLDQAFRVIVEEEIINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPL
DQCDKIFTFVEKNVATWKSNMFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARL
FPLSEKSGLNLQSQFNLENVTVFNTNEHESTLGQKHSEERDEGMDVEEGEMGDDEAPTSC
SIPIDYNLYRKFWSLQDYFRNPVQCYEKVSWKTFLKYSEEVLAVFKSYKLDDTQASRKKL
EELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLT
DEQSLWIEDTTKAVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERSQP
EFQLGPPDSKPMRPARKRPAPEDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSESRE
YMPTLEEFFEEAIEQADPENMVENKYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSL
PEYLENMVIKLAKELPPPSEEIKTGEDEDEEDNDALLKENNESPEVQRDKPMTGEQMETF
AIRLGEHWRALAPYLEMKDSDIRQIEADSDDVKMRAKQLLVAWQDQEGVHATPENLITAL
SKAGLGDLAESLTNDTDTSS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcagcacgcgtcgcggagcgccgctcggccggagcgatgtcgccgccgctg
ctttttagcctgcccgaggcgcggcaccgcttcacgatttccaccagagaagctctgcac
cacaaaaccctcaaaccgctgttgaacgcctttaatcagattcccgggagcgaaaatgag
aagaagtgtaccctggatcaagctttcagagttatcgtagaagaggaaataataaacaaa
gctccgtgtgaaaacctgttggcaattatttctcttgctattaatggagtcactgaaggt
atctgcactgcatcgacaccttttgtgcttttgggagatgttctggattgcttgcctctg
gatcagtgtgataaaattttcacttttgtggagaagaatgttgctacatggaaatcaaac
atgttttattctgcagggaagaactacttgctacgaatgtgcaatgaccttctaaggaga
ttgtctaaatcacaaaacacagtcttttgtggaagaattcaactgttcttggctagattg
tttccgctatctgagaagtcaggactcaacttgcagagtcagtttaacctggaaaatgtg
actgttttcaatactaatgaacacgagagcactcttgggcagaagcactcagaggagaga
gatgaaggaatggacgtagaagaaggtgagatgggagacgatgaagcaccaacaagttgt
tccattccaatagattataacctgtatagaaaattctggtcgcttcaggattactttaga
aaccctgtgcagtgctatgagaaggtctcatggaaaacttttcttaagtactcagaagaa
gttttggctgttttcaaaagttacaaattggacgacacgcaggcttcccgaaaaaagctg
gaagagctaaaaacaggtggagaacacgtgtactttgccaagttcctaaccagtgaaaag
ctgatggatttgcagctgagtgacagtaacttccgccgtcacatcttgttgcagtatcta
attctgtttcagtatctgaagggacaggtcaaatttaaaagttcaaactatgttctaaca
gatgagcagtctctttggattgaagatactacaaaagctgtttaccagcttctttcagaa
aatcctccagatggggaaagattctcaaaaatggtagagcatatattaaatactgaagag
aactggaactcatggaaaaacgaaggctgcccaagctttgtgaaagaaagatctcagcca
gagtttcagcttgggcctcctgattctaagccaatgaggcctgcaagaaagaggccagct
ccagaggacttcttaggaaaaggaccaaacaaaaaaattcttatggggaatgaggagctg
acccgactttggaatttatgtcctgataacatggaggcttgtaaatctgagagcagggaa
tatatgccaacactggaagaattctttgaagaagccattgaacaagcagatcctgaaaac
atggttgaaaataagtacaaggctgtgaacaactccaactatgggtggagagcactaaga
ctgctggcacgcagaagcccccatttcttccagccaacaaatcaacagttcaagagctta
ccagaatatctagaaaacatggtaatcaaattagccaaggagctgcctcctccttctgaa
gaaataaaaacaggcgaagatgaagatgaggaagataatgatgctttattaaaggagaac
aatgaaagtccagaggtacaacgggacaaacccatgacaggggaacaaatggaaacattt
gccatcaggctgggggagcattggagagctttggccccctacttggaaatgaaggattct
gacatccgtcagatcgaggcggatagtgacgacgtgaagatgagagccaagcagctgctg
gttgcctggcaggaccaggagggtgtacacgccacaccagagaacctgatcactgcgctg
agcaaagcggggctgggggaccttgccgagagcctgaccaatgacaccgacaccagcagc
tag
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