Lagopus muta (rock ptarmigan): 125693631
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Entry
125693631 CDS
T09141
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125693631 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125693631 (LIG4)
Enzymes [BR:
lmut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125693631 (LIG4)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125693631 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SKA1
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
125693631
NCBI-ProteinID:
XP_048801764
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All DBs
Position
1:138933729..138937626
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AA seq
912 aa
AA seq
DB search
MASAPASQLSPKRTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHSALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAVKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMINDQKLGHESLSKRYKILSNVFTPVTGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMIKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPAPNEKPTAFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPP
CNILCGTEKPEMYIEPCNSVIVQVKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKKRTVPKVKKVIGIAEQFKAPDLSNVNKI
SSVFEDVEFCVMTGTGRYSKSELESKIAECGGSVVQNPGPDTYCVIVGAENVRVKNIIAS
NKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTADTDVAQLK
EVFSRVKDNKKMPLDLIAELEERYSWNSCQLCIFRGNTIYVDYYAIINKPSTKIHGTRLS
IRALELRFYGAKVVPILEEGVSHVVIGEDHSRVKEVKALRRMFGKKFKIVSELWVTESIK
EGAPKNENQFLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacccgcctcacagctttctcctaaaagaacggtggcctcgcacgtgcct
tttgcagacctgtgttccaccctggagcgaatacagacgtgtaaatcccggccagagaaa
accaagtacttcaaggatttcttagattcctggagaaaattccacagtgctctccatcaa
aaagagaaagatgtcaccgattctttctatcctgctatgcggcttatacttccgcagctg
gaaagggaaaggatggcgtatggaattaaggaaaccatgcttgcaaaactttacattgaa
ctgcttaacttaccaaaagatggaaaggatgctgtgaagcttttaaattacagaacgccc
accggttcacgtggagatgctggagactttgcaatgatcgcatactttgtgttaaaaccc
cgaagccctaagcaaggcaggttgactgtagagcaggtcaatgaactgctggatgccatt
gcaaacaacaatgctgctaaaaacaagggactggtaaagaaaagccttcttcaattaatt
acccaaagcacagcactcgagcaaaagtggctcatccggatgattataaaggatctaaaa
cttggtgttagtcaacaaacgatattttcaatttttcatcctgatgctgctgaattacac
aatgtcacgacagatttggaaaaagtttgtaggcagctgcacgacccctctgtatcactt
agcgatgtttctatcacgttattttctgcctttaaaccaatgcttgctgctattgccgat
gtccagcaaattgagaagcagatgaataaccaggtattctacatagaaactaaactggat
ggtgaacgtatgcagatgcacaaagatggtgatgtgtataaatatttttccagaaacggg
tttgactatactcaacagtttggtgcttcccccctcgatggctcattaacaccatttatt
cataatgtatttaaaagtgacatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaaacgcaaacctttatgcaaaaaggaaacaaatttgacatcaaaagaatggta
gaggactctgatctgcagacctgcttctgtgtgtttgatgtattaatgataaatgatcag
aagttgggtcatgaatccctgagcaaaagatacaagatcttaagtaatgtatttacccca
gtaacaggcaggatacatgttgtacataaaaaaagtgccaggacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaaggcattatgataaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatgggctgatggatgagctagatcttcttattgttggtggttactggggaaaaggatca
cgtggtggaatgatgtctcattttctgtgtgctattgcagagactccagctccaaatgaa
aaacctactgcattccactctatttgtcgtgttggctctggctacactatgaaggaatta
tatgatctgggtttgaaactggctaaacattggaagccttacaataggaaggaccctcct
tgtaacattttgtgtggcactgaaaaacctgaaatgtacattgagccttgtaactctgtc
atagttcaggtcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ctgagattccccagaattgaaaaaataagagaggacaaagaatggtatgaatgcatgact
ttggacatgctagaacatcttagaagcagagcagaagggaagctggcatccaagcaccta
tatattgatgaatatgatgagccacaagagaagaaaaagagaactgtaccaaaggtgaag
aaggtaattggaatagctgaacagtttaaagctcccgatctttctaatgtcaacaaaatt
tccagtgtgtttgaggatgtagaattttgtgtgatgacaggaactggaaggtactccaag
tctgaactggaaagcaaaatagctgaatgtggtggcagtgtggtacagaaccctggacct
gacacttactgtgtcattgtaggagctgagaatgtcagagttaaaaacattattgcttcc
aacaaatatgatgtggtgaaagcagagtggcttcttcagtgttttcagtcaaaaatgctg
gtaccttggcagccagcctttatgattcacatgtctcctgacacaagagagcattttgct
cgtgagtatgattgctatggagacagctacacagcagatacagatgttgcacaactcaag
gaagtgttctcaagagtgaaggataataagaagatgcctttggacttgattgctgagtta
gaagaacggtattcatggaacagctgtcaactgtgtatattcagaggaaacactatttat
gtggactattatgctattattaacaagcccagtaccaaaatccatggcacaagactatca
attagagctttggagctccgtttttatggtgcaaaagtagttccaattcttgaggaaggt
gtgtcccatgttgttataggagaagatcattcccgggtaaaagaggtgaaagctctcagg
agaatgtttggaaaaaaatttaaaattgtatctgagctgtgggtaacagagtcaattaag
gaaggagccccaaagaatgaaaatcagttcttaatttaa
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