Lagopus muta (rock ptarmigan): 125699829
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Entry
125699829 CDS
T09141
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03013
Nucleocytoplasmic transport
lmut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125699829 (UPF3B)
03015 mRNA surveillance pathway
125699829 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125699829 (UPF3B)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125699829 (UPF3B)
mRNA cycle factors
P-body specific factors
125699829 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
125699829
NCBI-ProteinID:
XP_048815753
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All DBs
Position
13:16251279..16258935
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AA seq
475 aa
AA seq
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MKEDKENARPKERRGAPAGPGAGSGAAGGSDGRTGGTAELERLERPKDKKETLSKVVIRR
LPPSLTREQLEEHLQPLPEHDYFEFFANDSSLYPHVFSRAYINFRNQEDIVLFRDRFDGY
VFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDEKLTST
PETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWK
EEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLEKKEKSKKLETLRE
EKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFERDREYERAQREKLRRQEEER
RRQKERFEKEKVFRRKEEEVKKERDLLRDKGKKSDLTDFTCGVDKSEKVTKDDKKEDTIK
RDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKSTDQGAEKKQESESSNVKEEE
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggcccaaggagcggcgcggggcccctgccgggccg
ggagccggctcgggggcggcgggcggctctgacgggaggaccggcggcaccgccgagctc
gagcggctggagcggcccaaggacaagaaggagacgctgagcaaggtggtgatccggcgg
ctgccgcccagcctcacccgggagcagctggaggagcacctgcagcccttgcccgagcac
gactacttcgagttcttcgccaacgactccagcctgtacccgcacgtcttctcccgcgcc
tacatcaacttcaggaaccaggaggacatcgtgctgttccgagaccgcttcgatggctat
gtcttcgtggatcacaaaggtcaggaatatgctgccatagtagagtttgctcctttccag
aaagctgcaaagaagaagagcaagaaaaaggatgccaaaacggggacaattgaagatgat
ccagaatacaagaagtttttggaaagttacagtgcagatgatgagaagttaacctccact
cctgaaaccttattggaggaaatagaggcaagaaacaaagagctgattgctaaaaagact
actcccttactgaacttcttgaaaaataagcagaggctcagagaggaaaagagagaggag
aggaggaggagagaattggaaagaaaaagacaaagggaagaagaaagaagaaaatggaag
gaggaggagagaagaaagagaaaagaagcagaaaaactgaagaaagtagacagatgtcca
gaaaaagaaagagacagatcaaaagaagaaccaaagattaagctacttaagaagcctgaa
aaagatgaaaaagacttggagaaaaaagaaaaatccaagaaactggagactctgagggag
gaaaaaaatgcgagtagtgcatctgccaaacgatctgatggggagacaaaagaagagaag
gcaaaaaaatcggaagatgagtgtgtaaaggactacagggatcgagatagagattttgaa
agagacagagaatatgagagagcacagagggagaaactgaggcgccaagaagaagagcgt
cggaggcagaaagagcgctttgagaaagagaaggtttttagaagaaaagaggaggaggtg
aaaaaggagagagacttgctcagagataagggaaagaaaagtgatcttacagactttacc
tgcggcgtggacaaatctgagaaagtaaccaaagatgataaaaaggaggatacaattaag
agggatcgtatcagaaacaaggatcgtccagcaatgcagctgtaccagcctggagcccga
agccgaagcagattgtgtcagtatgaagacagtgctgcaaagtccacagatcagggagca
gagaagaaacaagagagcgagagcagtaacgtgaaggaagaggagtga
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