Lagopus muta (rock ptarmigan): 125701284
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Entry
125701284 CDS
T09141
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03250
Viral life cycle - HIV-1
lmut04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125701284 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
125701284 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125701284 (SAMHD1)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125701284 (SAMHD1)
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Gene cluster
GFIT
Motif
Pfam:
HD
HD_assoc_2
PDEase_I
Nse5
Motif
Other DBs
NCBI-GeneID:
125701284
NCBI-ProteinID:
XP_048819046
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Position
16:14009286..14034247
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AA seq
614 aa
AA seq
DB search
MGSPAAGWAAAPAKRARREGFAESSGGTAAYGDPRLWDTERLCRHLSRSGVGEPDLLRRF
RESGVTGAMLLDLPACALRITRVCLPDERLKVLACLNQLRQTVDIMKVFNDPVHGHIEIH
PLLVRIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGCLVRELKERQPEL
GITQRDILCVEIAGLCHDLGHGPFSHMFDGRFIPLVRQGLNWKHETASVEMFEHLITSNK
LEEVMESYGLILEEDMAFIKEQIGGPIDESTCEASWPYRGRPKEKSFLYEIVANKKNGID
VDKWDYFARDCHHLGIQNNFDYRRLIKFTRVCEAGNQKHICTRDKEVGNLYDMFHTRNCL
HRRAYQHKVGNIIEIMITEAFQKADSFLQIEGSKGKLYQISTAMEDMEAYTKLTDNIYLE
ILHSSRPELSEAREILRKIERRELYKFLGETQPEKVNEIPKDEYDDLAGDIANSKPEKDP
PNVELTAGDFIVDVVNMDYGMKDQNPIDNVLFYCKADPSKAIKISKEQVSRLLPGTFSEQ
VIRVYCKHQDPVIVSAAKQYFVQWCIKRDFTKPQDGDVVAPHLTPLKQSWNNRSRDEYMT
ASEPSCKQKLSFNK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcccggcggcgggctgggccgcggctcccgccaagcgcgcgcggcgtgagggc
ttcgccgagagctccggcggcaccgcggcctacggtgacccgcggctgtgggacacggag
cggctctgccgacacctctcgcgcagcggcgtgggtgagcccgacctgctgcgccgcttc
cgagagagcggcgtcaccggggccatgctgctcgacctgcccgcctgcgcgctgcgcatc
acccgcgtctgcctcccagatgagagactgaaagtgctcgcctgcctgaaccagctgagg
cagacagtggacatcatgaaggtttttaatgatccagtccatgggcacatcgagatacac
cctcttcttgttcgcatcattgacacgcctcagtttcagcgcctgcgatacattaagcag
ctgggtggcacttactttgtttttcctggagcctcccacaaccgctttgaacactcatta
ggagtgggctaccttgcaggatgtctggttcgtgaactgaaggagcggcagccggagctg
ggtataacccagcgagacatcctctgcgtggaaatcgctgggctttgccatgatttgggt
catgggccgttttcacacatgtttgatggaagatttattccacttgttcgtcaaggtttg
aactggaagcatgaaactgcttctgttgaaatgtttgagcacctgatcacatccaacaaa
ctggaggaagtcatggaatcgtatggtctcatcctggaggaagacatggccttcatcaag
gagcagataggagggcctatagatgagtcaacttgtgaggcatcgtggccctaccgagga
cgaccaaaggagaagagtttcctatatgagatagtagcaaacaagaaaaacggcattgat
gtggacaaatgggattattttgcaagggattgccaccacctagggatccagaataatttt
gattataggcgtttaattaaattcactcgagtttgcgaagcaggaaaccagaagcatatc
tgtacccgtgataaggaagttgggaatttgtacgatatgttccacactcggaattgcctg
caccggcgagcgtaccagcataaggttggcaacatcattgaaataatgattacagaagcc
tttcagaaagcagacagttttcttcaaatagaaggctctaaaggaaaattgtaccaaatc
tctacagcaatggaggacatggaagcctacacgaagctaactgataacatctacctggaa
attctgcactcaagtcgtccagaactgagtgaggcacgagaaattctgcgtaagatagaa
cggcgtgagctgtacaagtttttaggagagactcaacccgagaaagtgaacgaaattcca
aaggatgaatatgatgacctggcaggtgacattgctaactccaagccagaaaaggatcct
ccaaacgtggagctgacagctggagacttcatagttgatgttgttaatatggattatgga
atgaaagatcagaaccccattgataatgtcctcttctactgcaaggctgatccttccaag
gccatcaagatcagtaaagagcaggtttcaaggcttttaccggggaccttttcagagcag
gttatccgggtttactgcaagcatcaggatccagttattgtttcagctgcaaagcagtat
tttgttcagtggtgtataaagagggatttcaccaaaccacaggatggtgatgtggttgcc
cctcatctaactccactgaaacaaagctggaataacagaagcagggatgaatacatgaca
gcttcagagcccagctgcaagcagaagctttctttcaataagtaa
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