Lagopus muta (rock ptarmigan): 125701657
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Entry
125701657 CDS
T09141
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03082
ATP-dependent chromatin remodeling
lmut03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125701657 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125701657 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lmut01009
]
125701657 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125701657 (SMARCB1)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125701657 (SMARCB1)
Protein phosphatases and associated proteins [BR:
lmut01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125701657 (SMARCB1)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125701657 (SMARCB1)
SWI/SNF complex
125701657 (SMARCB1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125701657 (SMARCB1)
PBAF complex
125701657 (SMARCB1)
SWI/SNF complex
125701657 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
125701657
NCBI-ProteinID:
XP_048819961
LinkDB
All DBs
Position
17:complement(4704968..4715045)
Genome browser
AA seq
386 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHENQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTY
LREQKAKRNNQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHEN
ASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIAS
AIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCS
ELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDA
EMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaaaacctttgggcagaagcctgttaaattccagctggag
gaggacggcgagttttatatgatcggctccgaggtggggaactacctgcgtatgttccgg
ggctcactgtacaagaggtacccctcactctggagacgactggccacagtggaagaaagg
aagaagatagtggcatcttcacatgaaaatcagcggtctcacagtcccagaagatatcat
ggatatacaacattagccaccagtgtgacactgttaaaggcctctgaagtggaagagatc
ttggatggaaatgatgagaaatacaaggcagtgtctatcagcacagaacctcccacctac
ctcagagaacagaaggcgaagaggaacaaccagtgggtgccaacactgcccaacagctct
catcacctggatgcagtgccgtgctcaacaacaattaacagaaatcgcatgggcagggac
aagaagaggaccttccctctgtgctttgatgaccatgacccagcagtcatccatgagaac
gcatcccagccagaggttctggttccaatcaggcttgacatggaaattgatgggcagaaa
ctcagagatgcatttacatggaacatgaatgaaaagctgatgaccccagaaatgttctca
gagattctttgtgatgacctggatttgaatcctctgacctttgtccctgctattgcctct
gccatccgacaacagattgaatcgtacccgactgacagcatcctagaggatcagtcagac
caacgtgttattattaagctaaacatccatgtagggaacatctcccttgtagaccagttt
gaatgggacatgtcagagaaggagaattcaccagagaagtttgccttgaagctgtgctca
gagcttggcctgggtggggagtttgtcactactattgcctacagcatccggggacagctg
agctggcatcagaagacatacgccttcagtgaaaaccctttgccgactgtggaaatcgcg
attcgcaacacgggggatgctgaccagtggtgccctcttctggaaaccctcacagatgcc
gagatggagaagaagatcagagaccaggatagaaatacaaggcgcatgagacgcttggcc
aacactgctccagcctggtaa
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integrated database retrieval system
