KEGG   Listeria monocytogenes CFSAN006122: Y193_09230
Entry
Y193_09230        CDS       T03478                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
lmv  Listeria monocytogenes CFSAN006122
Pathway
lmv02024  Quorum sensing
lmv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lmv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Y193_09230 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Y193_09230 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lmv03019]
    Y193_09230 (hfq)
   03036 Chromosome and associated proteins [BR:lmv03036]
    Y193_09230 (hfq)
Messenger RNA biogenesis [BR:lmv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Y193_09230 (hfq)
Chromosome and associated proteins [BR:lmv03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Y193_09230 (hfq)
SSDB
Motif
Pfam: Hfq LSM DUF5608
Other DBs
NCBI-ProteinID: AHY98499
UniProt: J9S3H5
LinkDB
Position
1316159..1316392
AA seq 77 aa
MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFTVLLDVEGKQQLVFKHA
ISTFSPQKNVALNPDAE
NT seq 234 nt   +upstreamnt  +downstreamnt
atgaaacaaggtggacaagggttacaggactattacttaaatcaattgcgtaaggaaaaa
attcttgcaactgtatttttaacaaatggttttcagttaagaggacgtgttgtaagtttt
gacaattttaccgtactactagatgtcgaaggaaaacaacagcttgtatttaaacacgca
atttcaactttctccccgcagaagaatgtcgctttaaatcctgatgcggaataa

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