Listeria monocytogenes 08-5923 (serotype 1/2a): LM5923_1492
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Entry
LM5923_1492 CDS
T01164
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lmy
Listeria monocytogenes 08-5923 (serotype 1/2a)
Pathway
lmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM5923_1492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmy03019
]
LM5923_1492
Messenger RNA biogenesis [BR:
lmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LM5923_1492
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
HTH_6
FUT8_N_cat
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
ADB71333
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Position
1462457..1464019
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AA seq
520 aa
AA seq
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MTIAITIISSLLFLIVGLVVGSLIFKSSTEKKLAAARGTAELIVEDAKKEAETTKKEALL
EAKEENHRLRTEIENELRGRRTETQKAENRLLQREENLDRKDTSLSKREATLERKEESIS
KRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIILNQVEEELTHDTAIMVKESEN
RAKEESDKKAKNILSLAIQRCAADHVAETTVSVVTLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRREIARIALEKLVQDGRIHPARIEEMVDKARKEVDEHIR
EVGEQATFEVGIHSIHPDLIKILGRLRYRTSYGQNVLNHSLEVSKLAGILAGELGEDVTL
AKRAGLLHDIGKAIDHEIEGSHVEIGVELATKYKENDVVINSIASHHGDTEATSVIAVLV
AAADALSAARPGARSETLENYIRRLEKLEEISESYDGVEKSYAIQAGREVRIIVEPDTID
DLSSYRLARDIRKRIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcgcaatcacgatcatctccagtttgcttttcttaatcgtcggtctagttgtt
ggttctctaatttttaaatctagtacagagaaaaaactggctgctgcaagggggactgct
gaattaattgtagaggatgcgaagaaagaagcagaaactacaaaaaaagaagcattgctt
gaagcgaaggaagagaatcataggttacgtactgaaatcgaaaatgaacttcgtgggcga
agaacagagacacagaaagcagaaaatcgcttattgcaaagggaggaaaacctcgaccgt
aaagatacttctttaagtaaacgagaagctacacttgaaagaaaagaggagagtatcagt
aaacgtcaacaacaaattgaagagaaagaaagcaaactagctgagatgattcaagcggag
cagacagaactcgaaagaatttctgcgctcagcaaagaggaagcgaaatctatcatcctt
aaccaggtagaagaggaattaacgcatgatacagcaatcatggtcaaagaatcagaaaac
cgggccaaggaagagtcggataaaaaagcaaagaatattctctcactagctatccagcgt
tgtgcagctgatcatgtggcagaaacaacggtatctgttgttaccttaccaaatgatgag
atgaaaggtcggattatcggacgtgaaggccgtaatatccgcacgcttgagacgttaacg
gggattgatttgataattgatgatacaccggaagcagtaattctttccggatttgaccca
attcgacgtgaaatcgctagaatcgccttagaaaaacttgttcaagatggaagaatccat
ccagctcgaattgaagaaatggtggacaaagcccgtaaagaggtggatgaacatattcgc
gaagtcggggaacaagcaacatttgaagttggaattcattccatccatcctgatttgata
aaaattcttggccgcttgcgttatcgtactagttacggacaaaacgttcttaaccactca
ctcgaagtttcgaaacttgcaggaattcttgcaggagagcttggcgaagacgttacgctt
gctaaacgggccggactacttcatgacatcggtaaagcaattgaccatgaaattgaagga
agtcacgttgaaatcggcgtggaacttgctaccaaatacaaagaaaatgatgtggtaatc
aatagtattgcttcccatcatggagatacagaagctacttctgttatcgcagtattggtc
gcagcggcagatgcactttctgctgcaagaccgggagctcgtagtgaaacgcttgaaaat
tacatccgtcgtttagaaaaattagaagaaatttctgagtcttacgatggtgtagaaaaa
tcttatgctatccaagcaggacgtgaagtacgtattatcgttgagccagatacaattgat
gatctttcatcttaccgccttgcacgcgacataagaaaacgaattgaagaggaattagat
tatcctggtcacattaaagtgaccgtcattcgtgaaacaagagcagtagaatacgctaaa
taa
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