KEGG   Labrys sp. KNU-23: FZC33_03310
Entry
FZC33_03310       CDS       T06193                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lne  Labrys sp. KNU-23
Pathway
lne03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FZC33_03310 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lne03400]
    FZC33_03310 (ligD)
Enzymes [BR:lne01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FZC33_03310 (ligD)
DNA repair and recombination proteins [BR:lne03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FZC33_03310 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase CATASP
Other DBs
NCBI-ProteinID: QEN85289
UniProt: A0A5C1W880
LinkDB
Position
2:737012..739549
AA seq 845 aa
MSALEPYHHKRDFKVTPEPKGRTGRRRGNSFVIQKHDARRLHYDFRLEMDGVLKSWAVTK
GPSLVPGEKRLAVHVEDHPLDYGVFEGTIPKGEYGGGTVILWDRGTWQPIGDPHRGYDKG
HLEFELKGEKLAGRWHLIRMRGKPREKCENWLLIKADDEAARPPDAPDILEERPESVKTG
RGVAEVAGEEPGWSSRTGRLAPKSKRTRQPASRHKLGAVPDLASIKAARKTPMPGFVEPT
LAMLVAKAPAGPDWIHEIKFDGYRLQARIEAGRVKLLTRSGLDWTGKFGKPILAALQALP
IGSALIDGELVVEAGTGASDFSSLQADLSEGRSDRLVYYGFDLIYLDGYDLRALPLIRRK
ALLQGLLADARPEIRFSDHFEESGAMVLRHACRLSLEGIVSKLRTAPYQSGRGRSWVKSK
CSARQEFVVAGYVPSTMSRKAIGSLVLGVYQDGRLEPVGRVGTGFTRSVAEDLFRRLEGM
RIKQSPFARPLTAEEGRQVRFTRPELVAEVEFRAWTADRHLRHASFRGLREDKPAKEVVR
ETRKKAGTMAGAPRRTVKLTHPDRLYWPQEGVTKEGLADYYAEVWRVMAPFIVGRPLALL
RCPDGIEGPRFFQKHAWKGVNEHILQVSDPKDRDGEPLIAIEDLDGLIGLVQAAVLEIHP
WGSTLADWERPDLITMDLDPGDDVAWGEVISAAEQVKERLEQAGLAAFVKTSGGKGLHVV
APLKPKANWPKVKAFTKAMADAMAADSPDRFVSTITKAKRHGKILIDYLRNQRGSTAVAP
YSTRARPGAAVSMPVAWEELAPAIGPAYFTVTNTPTRLSALAADPWAHFREAAVPLEARV
ARKAA
NT seq 2538 nt   +upstreamnt  +downstreamnt
atgagcgcgctcgagccctatcaccacaaacgcgatttcaaggtgacccccgaaccgaag
gggcgcaccggacgcaggcgcggcaacagcttcgtgatccagaagcacgatgccaggcgg
ctgcattacgatttccggctcgagatggacggggtgctcaagagttgggctgttaccaag
ggacccagtctggtccccggcgaaaagcgccttgccgtgcatgtcgaggaccatccgctc
gactatggagttttcgaaggaaccatacccaagggagaatatggcggcggcaccgtgatc
ctttgggaccggggcacctggcaaccgatcggggatccgcatcggggctacgacaagggt
catctggaattcgagctgaagggcgaaaagctcgccggccgctggcatctgatccgcatg
cgcggcaagccgcgcgagaagtgcgagaactggctgctgatcaaggcagacgacgaagct
gctcgtccgccggacgctccggacatattggaggaacgcccggaatcggtgaagacgggc
cgcggtgtcgccgaggttgcgggggaagagccgggctggtcgtccaggacgggcaggctt
gcccccaagagcaagcgaacccggcaaccggcaagccggcacaagcttggcgccgtcccc
gacctggcttcgatcaaggcagcccggaagacgccgatgccgggtttcgtcgaaccgacg
ctcgcaatgctggtcgccaaggcgccggctggtccggattggatccacgagatcaaattc
gatggttatcgcctccaggcgcgcatcgaggcaggacgggtcaagctcctgacccgcagc
ggcctcgactggaccggaaagttcggcaagccgatactggccgcgctgcaggccttgccg
atcggctcggcgctcatcgatggcgaattggtggtcgaagccggcacgggagcctcggat
ttttcctctctgcaggcggatctgagcgagggccgctccgaccgtctcgtctattacggc
ttcgatctcatctatctcgacggctatgacctcagggccctgccgttgatccggcgcaag
gcgcttctgcagggactgctcgccgatgccaggccggagatccgcttttccgatcacttc
gaggagagcggcgccatggtcctgcgtcacgcctgccggctgagcctggaaggcatcgtc
tccaagcttcgcactgccccctaccagtcggggcgcggcaggagctgggtcaagtccaaa
tgctcggcgcgccaggagttcgtggtcgcgggctatgtgccatcgaccatgtcccgaaag
gcgatcggatcgcttgtcctgggtgtctatcaggatgggcgcctggagccggtcggccgg
gtcggcaccggcttcacgcgttcggttgccgaagatctgttccggcgcctggagggcatg
cgcatcaagcagagcccgtttgcccgcccgctcaccgccgaggaaggccggcaagtgcgc
ttcacgcgcccggaactggtggccgaggtggaattccgggcctggacggccgatcgtcat
ctgcgccatgcttcctttcgcggtcttcgcgaggacaagccggcgaaagaggtcgtcagg
gagaccaggaaaaaggcaggaaccatggctggagcaccgcgccgaaccgtgaagctcacc
catcccgatcggctctactggccgcaggaaggtgtgaccaaggaagggcttgccgattat
tacgccgaggtctggcgcgtcatggcgccctttatcgtcggccgacccctggctctgctg
cgttgtcctgacggcatcgaaggacctcgcttctttcagaagcacgcctggaagggcgtg
aacgagcacatccttcaggtgagcgatcccaaggaccgggatggcgagcccctgatcgcg
atcgaggatctcgacggcctgatcggtctggtccaggcggccgtcctggagattcacccc
tggggatcgacgctcgccgattgggagcgacccgacctgatcaccatggatctcgatccc
ggtgacgatgtcgcgtggggcgaggtcatctcggccgccgagcaggtgaaggaacggctc
gaacaggctgggctcgctgctttcgtgaagacgtcgggcggcaagggactgcatgtggtc
gctcccttgaaaccgaaagccaactggccgaaggtcaaggcgttcaccaaggccatggcc
gatgccatggcagccgacagtccggatcgcttcgtctcgaccatcaccaaggcaaagcgc
cacggcaagatcctgatcgattatctgcgcaaccaacgcggctccacggcggtggcgccc
tattcgacccgggcgcggcccggcgccgccgtttccatgccggtcgcctgggaggaactg
gcgcccgcgatcgggccggcctatttcacggtgacgaacacgccgacgcggttatcggcc
cttgccgccgatccctgggcgcatttccgtgaagcggccgtacccctcgaagcccgagtg
gcgcgcaaggcagcttga

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