Labrys sp. KNU-23: FZC33_03310
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Entry
FZC33_03310 CDS
T06193
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lne
Labrys sp. KNU-23
Pathway
lne03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FZC33_03310 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lne03400
]
FZC33_03310 (ligD)
Enzymes [BR:
lne01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FZC33_03310 (ligD)
DNA repair and recombination proteins [BR:
lne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FZC33_03310 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
CATASP
Motif
Other DBs
NCBI-ProteinID:
QEN85289
UniProt:
A0A5C1W880
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All DBs
Position
2:737012..739549
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AA seq
845 aa
AA seq
DB search
MSALEPYHHKRDFKVTPEPKGRTGRRRGNSFVIQKHDARRLHYDFRLEMDGVLKSWAVTK
GPSLVPGEKRLAVHVEDHPLDYGVFEGTIPKGEYGGGTVILWDRGTWQPIGDPHRGYDKG
HLEFELKGEKLAGRWHLIRMRGKPREKCENWLLIKADDEAARPPDAPDILEERPESVKTG
RGVAEVAGEEPGWSSRTGRLAPKSKRTRQPASRHKLGAVPDLASIKAARKTPMPGFVEPT
LAMLVAKAPAGPDWIHEIKFDGYRLQARIEAGRVKLLTRSGLDWTGKFGKPILAALQALP
IGSALIDGELVVEAGTGASDFSSLQADLSEGRSDRLVYYGFDLIYLDGYDLRALPLIRRK
ALLQGLLADARPEIRFSDHFEESGAMVLRHACRLSLEGIVSKLRTAPYQSGRGRSWVKSK
CSARQEFVVAGYVPSTMSRKAIGSLVLGVYQDGRLEPVGRVGTGFTRSVAEDLFRRLEGM
RIKQSPFARPLTAEEGRQVRFTRPELVAEVEFRAWTADRHLRHASFRGLREDKPAKEVVR
ETRKKAGTMAGAPRRTVKLTHPDRLYWPQEGVTKEGLADYYAEVWRVMAPFIVGRPLALL
RCPDGIEGPRFFQKHAWKGVNEHILQVSDPKDRDGEPLIAIEDLDGLIGLVQAAVLEIHP
WGSTLADWERPDLITMDLDPGDDVAWGEVISAAEQVKERLEQAGLAAFVKTSGGKGLHVV
APLKPKANWPKVKAFTKAMADAMAADSPDRFVSTITKAKRHGKILIDYLRNQRGSTAVAP
YSTRARPGAAVSMPVAWEELAPAIGPAYFTVTNTPTRLSALAADPWAHFREAAVPLEARV
ARKAA
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgctcgagccctatcaccacaaacgcgatttcaaggtgacccccgaaccgaag
gggcgcaccggacgcaggcgcggcaacagcttcgtgatccagaagcacgatgccaggcgg
ctgcattacgatttccggctcgagatggacggggtgctcaagagttgggctgttaccaag
ggacccagtctggtccccggcgaaaagcgccttgccgtgcatgtcgaggaccatccgctc
gactatggagttttcgaaggaaccatacccaagggagaatatggcggcggcaccgtgatc
ctttgggaccggggcacctggcaaccgatcggggatccgcatcggggctacgacaagggt
catctggaattcgagctgaagggcgaaaagctcgccggccgctggcatctgatccgcatg
cgcggcaagccgcgcgagaagtgcgagaactggctgctgatcaaggcagacgacgaagct
gctcgtccgccggacgctccggacatattggaggaacgcccggaatcggtgaagacgggc
cgcggtgtcgccgaggttgcgggggaagagccgggctggtcgtccaggacgggcaggctt
gcccccaagagcaagcgaacccggcaaccggcaagccggcacaagcttggcgccgtcccc
gacctggcttcgatcaaggcagcccggaagacgccgatgccgggtttcgtcgaaccgacg
ctcgcaatgctggtcgccaaggcgccggctggtccggattggatccacgagatcaaattc
gatggttatcgcctccaggcgcgcatcgaggcaggacgggtcaagctcctgacccgcagc
ggcctcgactggaccggaaagttcggcaagccgatactggccgcgctgcaggccttgccg
atcggctcggcgctcatcgatggcgaattggtggtcgaagccggcacgggagcctcggat
ttttcctctctgcaggcggatctgagcgagggccgctccgaccgtctcgtctattacggc
ttcgatctcatctatctcgacggctatgacctcagggccctgccgttgatccggcgcaag
gcgcttctgcagggactgctcgccgatgccaggccggagatccgcttttccgatcacttc
gaggagagcggcgccatggtcctgcgtcacgcctgccggctgagcctggaaggcatcgtc
tccaagcttcgcactgccccctaccagtcggggcgcggcaggagctgggtcaagtccaaa
tgctcggcgcgccaggagttcgtggtcgcgggctatgtgccatcgaccatgtcccgaaag
gcgatcggatcgcttgtcctgggtgtctatcaggatgggcgcctggagccggtcggccgg
gtcggcaccggcttcacgcgttcggttgccgaagatctgttccggcgcctggagggcatg
cgcatcaagcagagcccgtttgcccgcccgctcaccgccgaggaaggccggcaagtgcgc
ttcacgcgcccggaactggtggccgaggtggaattccgggcctggacggccgatcgtcat
ctgcgccatgcttcctttcgcggtcttcgcgaggacaagccggcgaaagaggtcgtcagg
gagaccaggaaaaaggcaggaaccatggctggagcaccgcgccgaaccgtgaagctcacc
catcccgatcggctctactggccgcaggaaggtgtgaccaaggaagggcttgccgattat
tacgccgaggtctggcgcgtcatggcgccctttatcgtcggccgacccctggctctgctg
cgttgtcctgacggcatcgaaggacctcgcttctttcagaagcacgcctggaagggcgtg
aacgagcacatccttcaggtgagcgatcccaaggaccgggatggcgagcccctgatcgcg
atcgaggatctcgacggcctgatcggtctggtccaggcggccgtcctggagattcacccc
tggggatcgacgctcgccgattgggagcgacccgacctgatcaccatggatctcgatccc
ggtgacgatgtcgcgtggggcgaggtcatctcggccgccgagcaggtgaaggaacggctc
gaacaggctgggctcgctgctttcgtgaagacgtcgggcggcaagggactgcatgtggtc
gctcccttgaaaccgaaagccaactggccgaaggtcaaggcgttcaccaaggccatggcc
gatgccatggcagccgacagtccggatcgcttcgtctcgaccatcaccaaggcaaagcgc
cacggcaagatcctgatcgattatctgcgcaaccaacgcggctccacggcggtggcgccc
tattcgacccgggcgcggcccggcgccgccgtttccatgccggtcgcctgggaggaactg
gcgcccgcgatcgggccggcctatttcacggtgacgaacacgccgacgcggttatcggcc
cttgccgccgatccctgggcgcatttccgtgaagcggccgtacccctcgaagcccgagtg
gcgcgcaaggcagcttga
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