Candidatus Lokiarchaeum ossiferum: NEF87_000988
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Entry
NEF87_000988 CDS
T09593
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
lob
Candidatus Lokiarchaeum ossiferum
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lob03019
]
NEF87_000988
Messenger RNA biogenesis [BR:
lob03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
NEF87_000988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UYP44703
LinkDB
All DBs
Position
complement(1215644..1218592)
Genome browser
AA seq
982 aa
AA seq
DB search
MSPSLSGILQRKKYFIILDKDEEHPKKPFFDVICFELIKDDIFYGEIRYLDRPFFTGLVL
FDKEPEKETLIPFKFWKRNLKARNVENQLKPIDPTEFRNFILNATFIIAGNHLNKPQGHN
LEKYQVVETDAHEVQQHQMDEYLKVLQPIYDYCSSIQYSEIRNYLFCHSCKQDKKYTLID
EKTRYKNQAFYVCKRCAGKEVIASLKQKIDVSSSLKTYLRDLLLNYRDVVKVINVFNPNF
NILDHREATLVGVKKKKIKQSPQKPQSIYDFSLPAPLKLYYQEKHRTSLLPAQIMALENG
LLERQDELVVSATSSGKTMIGELAGISKILEDKIKFLKQEGISNPFDSKDTLFDSKIEQK
LTKEQESYLEKLKNTRTRTRMLYVVPIVALANMRHREYAEFKKYGVNSALKVGVSHISRK
SNVKDEFGQFGKADVVIATYEAIDILLRSSHPHLLRDFRTIVIDEIQMLADAERGFILDG
MIARLRLYLPKAQFLYLSATISDPKGLAKHLRAALVHYTDRPVELERHLVMCIDENAKMK
NMRNIIREEYKTRSSFGFRGQTIVFTNSRKNTEKFADFLRANHVPAYAYHGGLEYGQRKF
VEKSFEMQKIACVVTTAALAAGVDFPASNVIFFNLIMGIQQLTVAEFEQMSGRAGRLKKH
DKGTVYLLVSPGKTNAGNQSDTEEQLALKLLKGKIEPLKLEPNEDRMFLEVLAIIAMYSS
QRDQEHGISKENLQYFHAMMYNGDFDLHQALIFLHSNRFIKAINNNTEYRTTRFGQATAE
SFFSLEQALEIRKKLLVPVSETVPAPDMLVIAQHLDKFNNVYVTNRILAELSMKNEKQSR
SNNFFSTSVLSMISADHLGKKKHGRINRRLYNVIMAWSEDIFNCACDDNPYCDCGKRNVE
GFIFDYRLSGMSISEIVDTFQDEYEVRMFPGDIIDYLEGIIYALLSIQKIGKSLRVPPQT
MLKLRDIPQLVTALIGPRKTKK
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgagtccttcactatctggtattctccaacgaaaaaaatattttattattcttgataaa
gatgaagagcatcctaaaaaacccttcttcgatgtcatttgttttgaactgattaaagat
gatattttctatggagaaattcgctatttagatcgcccttttttcacaggacttgtgtta
tttgataaagagcctgaaaaagaaactcttattcccttcaaattttggaaacgtaattta
aaagcaagaaatgttgagaatcaattaaaaccaatcgatcctaccgagtttcgtaatttt
attttaaatgctaccttcattattgcagggaatcatttgaacaaaccccaaggacataat
ttggagaaatatcaagtagtggaaactgacgcccatgaagttcaacaacatcaaatggat
gaatatttgaaagtgcttcagccaatttatgattattgcagttcaattcaatactctgaa
attcgcaattatctcttttgccattcttgcaagcaagataaaaaatatacattaattgat
gaaaaaacacgctataaaaatcaagcgttttatgtatgtaagcgatgtgcaggaaaagaa
gtgattgcaagtttaaagcagaagattgatgtatcttcctctttaaaaacctatttgcgc
gatttattattaaattatcgtgatgtagtaaaagtgattaatgtctttaatccaaatttc
aatatccttgatcatcgagaagcaacgctcgtcggagttaaaaagaaaaaaattaaacaa
tccccccaaaaaccacaaagtatttatgatttttcattacctgctcccctaaaattatac
tatcaagaaaaacatcgtacttctttacttcctgcccaaatcatggctcttgaaaatgga
ttattagaacggcaagatgaacttgtggtctctgccacctcttcaggaaaaaccatgatt
ggagaacttgcaggtatttcgaaaattttggaagataaaataaaatttttaaaacaagaa
gggatttccaatccatttgactccaaggataccttatttgactcaaaaatcgaacaaaaa
ttaacaaaagagcaagaatcgtatcttgaaaaattgaaaaatacccgtactcggactcgc
atgctctatgtcgttccaattgtggctttggcaaatatgcgtcacagagaatatgcagaa
tttaaaaaatatggggttaattctgctttaaaagtaggggtgtcacacatttctcggaaa
tcgaatgtcaaagatgaatttggtcaatttggaaaagctgatgttgttattgccacatat
gaagcgattgacattcttctaaggagttctcatccccatcttcttagggattttagaacc
attgttatcgatgagattcaaatgcttgctgatgctgaacgaggttttattctggatggg
atgatcgctcgtcttcgtctttatttaccaaaagctcaatttctctacttgagtgcaaca
atttcggatccaaaaggcttagctaagcatttacgggctgctttagttcattatacagac
agaccggtcgaactcgaacgtcatttagtaatgtgtatcgatgaaaatgcaaaaatgaag
aatatgcgaaatattattcgggaagaatataaaacccgttcgtcctttggattcagaggt
caaaccatagttttcacaaactctcgtaaaaacaccgaaaaatttgcagattttttgcgt
gcgaaccatgttcccgcttacgcctatcatggaggcttagagtatgggcaacggaaattt
gtcgaaaaaagttttgaaatgcaaaaaattgcttgtgttgttactacggccgctcttgct
gcgggggtggattttcctgcaagtaatgtcattttctttaatctaatcatgggaattcaa
caactaacggttgcagaatttgaacaaatgtctggaagggctggtaggttgaaaaaacat
gacaaaggaacagtatatcttcttgtatcgcccggaaaaacgaatgccgggaatcaaagt
gatacggaagagcaactcgctttaaaattacttaagggcaaaattgaaccattaaaactt
gaaccaaatgaagatagaatgtttttggaagttttggcaattatcgcaatgtattcctcc
caaagagatcaagaacatgggatttcaaaagagaatttacaatattttcatgctatgatg
tacaatggtgactttgatcttcatcaagctttgatatttttacattctaatcgatttatc
aaggctatcaataataatacggaatatcgaacaacacgatttggtcaagcgactgcagaa
tcatttttttcattggaacaagctttggaaattcgcaaaaaattacttgttccagtttca
gaaactgtacctgctcccgatatgttagttattgctcaacatcttgataaatttaataat
gtttacgttaccaaccgaattctcgcagaattaagcatgaaaaatgaaaaacaatcccga
tccaacaatttcttttcaacttccgtcctctccatgatcagtgcagatcacttgggaaag
aaaaaacatggaaggatcaatcgccggttatataatgtcatcatggcctggtcggaagat
atatttaactgtgcctgtgatgataatccttattgtgattgtgggaaacgtaatgttgaa
ggatttatttttgattatcgcctttctgggatgagtatctctgaaattgtagatactttt
caagatgaatatgaagttcgcatgtttcctggcgatattatcgattatctcgaagggatt
atttatgctcttttatcaattcaaaaaattggaaaatcacttcgagttccaccccagaca
atgttgaaattgcgtgatattccgcaattagtaactgccttgattggaccgcgcaaaacg
aagaaataa
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