Candidatus Lokiarchaeum ossiferum: NEF87_003017
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Entry
NEF87_003017 CDS
T09593
Name
(GenBank) RNA polymerase-associated protein RapA
Organism
lob
Candidatus Lokiarchaeum ossiferum
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF3670
Helicase_C
ResIII
UDPG_MGDP_dh_N
Motif
Other DBs
NCBI-ProteinID:
UYP46732
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Position
complement(3562782..3566111)
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AA seq
1109 aa
AA seq
DB search
MPLDLTFIPPNFWNRKSSNFHLLTKGKKLPADSGFFFLWDSQTDSLEEIEKEVATIFPKV
PVAKLLSCSLRIAKKNGKINPKDSSKFLKLSQVQGKIMPLLPAIKILFSLNITETIDRSR
KIISYSDSIKTWAYLTKFTMELLSRGNFIPYLDQLTEHEYKGQWKIILKTQQDHNRINNL
IRNSVWASYPLPIDFIPSQTIKDQYYTSGLWHPSFLFAQYIDTSADMLIRSSIDDKFLEK
TALRYNYEFNTSEEFENACADDETSPWDLRFLTACIGKNNKFQINRFCDTPIPGILRNWV
QNSQGFSFSLGFSFSFRLDYPKTPNADWVLGYYLQPFHEPDNFIPLDDLWDGIITHSLEY
ANVCDEENKLQEEVLRALGTARKYFPPISRSLDSKNPQQLKLKSAEVMEFLRTSMYLLIQ
AGFEVVLPEQFRLQGQQRLSARMVVKQKESSTTTTRSHSGLGKPDSLFDINSMMEYHWEA
QLEGKLLTEKEFLELANSREPLIFWRDQWILVDPQDMENLSPIFKNQKSIKGEIPYLEAL
KLGMAGQIQVGSQGSQYVVELEGEFQQIVNQLSDIESFSTLQVPETFHGNLRAYQETALT
WLGNMAEFNFGVCLADDMGLGKTVEVISFLEYRKEKYAQMENSILIICPTSVLFNWKREI
QKFAPNFDIYTHHGPERKKEAKYLQEFMQPHRIILTTYGTVRNDIDFFETIPFTGVILDE
SQNIKNYKTQQTQAILRLKSQYRIALSGTPIENRLLELWTLFQFLNPGLLGKRAEFQKKF
VYPIERFHSEQISAKLQRFISPFILRRLKSDKNIIKDLPEKNEIKVYLQLAPEQAKLYAQ
VVNSTMQELENLEQNQQKRRGLILRLLTHTKQICNHPFQYLHLGSDYFELTPEVVDSTNE
EALDNDNLVEATSSHLKSISLDDFFKESVKMGRLIEMIDEILEDGEKILIFTQFKQMGTL
LQKALELKYKLPILFFHGGIPQNKRGEMVDDFQSTDLQSPPVMILSLRAGGTGLNLTQAS
TVFHFDRWWNPAVEDQATDRAYRIGQQNRVNVYKFVSTGTIEEKIDQMLEEKRDLADRIL
TSSGETWITSLSNEELRDLFSLNSMEGGI
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgccattagatttaacgttcattcctccgaacttctggaaccgaaaaagtagtaatttt
cacttattgacaaaaggaaaaaaactcccagcagatagcgggtttttttttttgtgggat
tcccaaacagattctttggaagaaattgagaaagaagtggcaacaatttttccaaaagta
ccagttgcaaaacttttatcttgctctttacgaatagcaaaaaagaatggaaaaataaat
ccaaaagactcatcaaaattccttaaattaagccaggttcaagggaaaattatgcctctg
cttccggcaattaagattttgttctccttaaatatcactgaaactatagatcgaagtcga
aagattatttcatattcggattcaattaaaacttgggcttatttaactaaatttaccatg
gaacttctttcacgaggaaatttcatcccgtatttagaccaattgactgagcacgaatat
aagggtcaatggaaaatcattctaaaaacccagcaggaccataatcgaattaataatcta
attcggaattctgtttgggccagttatcctctccctattgattttataccttctcaaacc
ataaaagatcaatattatactagtgggttatggcatccttcatttctgtttgcgcaatac
atcgatacaagtgctgatatgttaattcggtcttcaattgatgacaaatttctagagaag
acggctttacgttataattatgaattcaatacttcagaagaatttgaaaacgcgtgtgct
gatgatgaaacaagcccttgggacctccgattcttaacagcttgtattggaaaaaataac
aaatttcaaattaatcggttttgtgacactcccattccggggattttacgaaattgggtg
caaaatagccaagggttttctttttccttaggattttcattttctttccgtttagattat
cccaaaacaccgaatgccgattgggtgttggggtattaccttcaaccctttcatgaacca
gataattttattccattagatgatttatgggatggaataattacccatagtttagaatat
gcaaatgtctgtgatgaagaaaataaattacaagaagaagtattgcgggcattgggtact
gcgaggaaatattttccccctatttccagatcattagatagcaagaatccacaacagcta
aaattaaaatctgcagaggttatggaatttttacgaacatccatgtatttacttattcaa
gcaggatttgaggttgtcttaccagaacaatttcgccttcaaggtcaacaacggctttcg
gctcgaatggtggtaaaacaaaaggaatcttcaactacaacaactcgatctcacagtgga
ctaggaaaacctgattcattatttgatattaattctatgatggaataccattgggaagct
caattggaaggaaaactactcacggaaaaagaattcctcgaactagctaatagtcgagaa
cctttaattttctggcgcgaccaatggattttggtagatcctcaagacatggaaaattta
agtccaatttttaaaaatcagaagagtattaaaggagaaattccctatctggaagctttg
aaattgggaatggcaggtcaaatccaagtgggatcccaaggttctcaatatgtcgtggag
ttagaaggagaattccaacaaattgttaatcaattaagtgacattgaatctttttcaact
ttacaagttccagaaacgttccacggaaatttaagagcctaccaagaaacggctcttaca
tggttaggtaatatggcggaattcaattttggtgtctgtctagccgatgatatgggactc
gggaaaacggtagaagtgatctcctttttagaatatcgaaaagaaaaatatgctcaaatg
gaaaatagtatcctgatcatttgccccacttctgttctgtttaattggaaacgggagatc
caaaaatttgcgccgaattttgatatttacactcatcacggtccagaacgaaagaaagaa
gcaaaatacttgcaagaatttatgcaacctcatcgaattattcttacaacatatggaacc
gttcgcaatgatattgatttctttgaaacgattccttttaccggtgtcattttagatgaa
tcccagaacattaaaaattacaaaacgcaacaaactcaggcgattttgcgcttgaaaagt
caatatcgaattgctctcagcggaactcccattgaaaaccgtttattggaactttggact
ttgtttcagtttttaaatccaggattattgggcaaacgggcagaatttcagaagaaattt
gtctatcccattgagcgatttcatagtgaacaaatttccgctaaacttcaacgattcatt
tcaccttttattctccggcggttaaaatcggataaaaacatcatcaaagatcttcccgaa
aagaatgaaataaaagtttatttacaactggctccggagcaggcaaaactttatgctcaa
gtggtaaattcaactatgcaagaattggaaaacttagaacaaaaccaacaaaaacgacgt
ggcttgattttacgcttattaacacacaccaaacaaatctgcaatcatccctttcaatat
ttacatttgggatccgattattttgaattaactcctgaagtcgttgacagtaccaatgaa
gaagccctcgacaatgataatctcgtggaggccacatcttcacatcttaaatccatcagc
ttagatgatttctttaaggaatctgtaaaaatgggtcgattaatagaaatgatcgatgaa
attttggaggatggagaaaaaattttgattttcacccaattcaaacaaatgggaaccttg
ctgcaaaaagctttggaactgaaatataaacttccgatcctcttcttccatggaggaatt
ccacaaaacaaacgtggtgaaatggtggatgattttcaatccacagatcttcaaagccct
cctgtcatgattttgtctcttcgcgctggtggaacaggattaaatctcactcaagcatca
acagtttttcattttgatcggtggtggaatccagcggttgaggatcaagcaactgatcga
gcttatcgtatagggcaacagaaccgtgtaaatgtgtacaaatttgtttctacaggcact
attgaagagaaaattgatcaaatgcttgaagagaagcgagatttggcggatcgaatttta
acttcttcaggagaaacgtggataacgagcctttccaatgaagaactaagagatttattc
tccttaaattctatggaaggggggatttaa
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