Lepisosteus oculatus (spotted gar): 102685073
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Entry
102685073 CDS
T07349
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
102685073 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
loc04054
]
102685073 (dhx58)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102685073 (dhx58)
Pattern recognition receptors [BR:
loc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
102685073 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
HydF_dimer
Motif
Other DBs
NCBI-GeneID:
102685073
NCBI-ProteinID:
XP_006638307
Ensembl:
ENSLOCG00000012582
LinkDB
All DBs
Position
LG15:5115420..5126713
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AA seq
681 aa
AA seq
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MNLYSYQEEVVQMALEGKNIIIWLPTGGGKTRAAVYVTKRHLQTKPRGKVAVLVNKVHLV
DQHYNKEFRPFLGNSYAIAHISGDSDQKDFFAKVVQDNDIIICTAQILENALKNTEEEKH
VNLTDFTLLIFDECHHTHKDAVYNKIMECFLAMKLQRQGDLPQVLGLTASPGTGGAKTFE
GAMEHVLQICANLDAAAIVSSKVHHKELQAKVPKPRKQYDIVNPRLLDPFGDKLKEMMRQ
IHNYMDAEGISRTFGTQEYEQEVVLLEKRGAEEGNRQMSQCALHLRKYNDSLLINDTVRM
VDALTVLEDFYSVQRATRTGLDHTDRFLFALFQNNETELQRLAAQQCFENPRLAVLERTL
LDQFGAQGKSRGILFSKTRTSTRCLDSWVSSNPQLQQAGIRAAILTGAGVSNQAGHMTQR
KQQETIQRFRDGELNLLISTSVAEEGLDIPECNLVVRYGLITNEIAMKQASGRARAEASV
YSVVAPQGGRELRREKTNEYLEGLMERAIDEVQRMPPREYMLKIRELQKEAVIARHLAKE
KAEGKRSRYGPANVRLHCRRCNTAVCHGNDLQVIENNHHVVVNPLFEYYYQKGGKVILPR
TFEDWEPGCAISCAGCGQEWGMEMIFKGVILPNLSIKNFVMETPDGRFSKKQWKDAPFSM
EEFDYIEYCERKFSDSLGDLA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgtacagctatcaggaggaggtggtccagatggctctggagggaaagaacatt
atcatatggctccccactggaggggggaagaccagggcggcggtgtatgtgaccaagaga
cacctgcagacaaagcccagggggaaggtggctgtcctggtcaacaaggtgcacctggtg
gaccagcattacaacaaggaattccggcctttcctggggaattcctacgccatcgcgcac
atcagcggagattccgaccagaaggatttctttgccaaagtggtgcaggacaatgacatc
atcatctgcacagcccagatcctggagaacgccctgaagaacacggaggaggagaagcat
gtgaatctcacagacttcacgctcctcatcttcgacgagtgccaccacacccacaaggat
gctgtgtacaataagatcatggagtgcttcctcgccatgaagctgcagaggcagggggac
ttgcctcaggtgctcggtctcactgcctccccagggaccggaggggccaagacctttgag
ggagccatggagcacgtgctgcagatctgtgcgaaccttgacgcggcggccatcgtctcc
tcgaaagtgcaccacaaagagcttcaagcgaaagtccccaagccgagaaagcagtacgac
atcgtcaatccgcgactgctggacccctttggggacaagctgaaggagatgatgaggcag
attcacaactacatggatgctgaagggatcagccggacgtttggcactcaggagtacgag
caggaggtggtgctgctggagaagagaggcgcggaagaggggaacaggcagatgagtcag
tgcgccctgcacctgcgcaagtacaacgactcgctgctgatcaacgacaccgtgcgcatg
gttgatgccttgaccgtgctggaggacttctacagcgtgcagagggccacccgcactggc
ctggaccacaccgaccgcttcctgttcgcactcttccagaataatgagacggagctgcag
cgcctggctgcccagcagtgttttgagaacccgcgcctggctgtgctggagcggaccctg
ctggaccagttcggggctcaggggaagtcgcgcgggatcctcttctccaagacccgcacc
agcacccgctgcctggacagctgggtctcctccaatccgcaactgcagcaggccggcatc
cgggccgccatcctcaccggggccggggtcagcaaccaggcgggccacatgacgcagcgg
aagcaacaggagactatccagcggttccgggacggcgagctgaacttgctgatttccacc
agcgtggctgaggagggcctggacatccctgagtgtaacctggtggtccgctatggcctc
atcaccaatgagatcgccatgaaacaggccagcgggcgtgcccgggccgaggccagcgtg
tactcggtggtggcaccacagggcgggcgggagctgaggagggagaagaccaacgagtac
ctggaggggctgatggagagggccatcgacgaggtgcagcgcatgcccccccgcgagtac
atgctcaagatccgggagctgcagaaggaggcggtcatcgctcgccacctggcgaaggag
aaggcggagggcaagaggagccgctacgggccggccaacgtgcgcctgcactgccgccgc
tgcaacaccgcggtttgccacggcaacgacctgcaggtcatcgagaacaaccaccacgtc
gtggtcaaccccctgttcgagtactactaccaaaagggcggaaaggtcatccttccacgg
acgtttgaagactgggagccgggctgtgcaattagctgcgctggttgtggccaggagtgg
ggcatggagatgatctttaagggagtgattctgcccaatctgtccatcaaaaacttcgtc
atggagacccccgacggacgcttctccaagaagcagtggaaagacgcccccttcagcatg
gaagagtttgactacatcgagtactgcgagagaaagttctccgactccctgggtgacttg
gcctaa
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