Lepisosteus oculatus (spotted gar): 102690031
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Entry
102690031 CDS
T07349
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03013
Nucleocytoplasmic transport
loc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102690031 (upf1)
03015 mRNA surveillance pathway
102690031 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102690031 (upf1)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102690031 (upf1)
5.6.2.5 RNA 5'-3' helicase
102690031 (upf1)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102690031 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102690031 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102690031
NCBI-ProteinID:
XP_006639864
Ensembl:
ENSLOCG00000002072
UniProt:
W5M218
LinkDB
All DBs
Position
LG19:3811223..3828366
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGAVDDAVAKTSQLLAELNFEEDEEDTYYTKDLPAHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMSTAMYDAREALIPGSVYDRSNTGRPSNMYFQTHDQIGMIGAGPSHVAAM
NIPIPFNLVMPPMPPPGYLGQANGPAVGRGAPKGKPGRGGRQRNRGMGNQGNNQSNLPNS
QASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDMALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcacagactctaaccttcctggacacggaggaa
gccgagctgctgggagccgatacccagggctcggagttcgagtttaccgacttcacgctg
cccagccagacccaaacgcaaggacagacccagagtcagctggacaaccaggtgaatggc
cctgatggagttttgcagaatggagctgtggatgatgctgtagcaaaaaccagccagctg
cttgctgaactgaactttgaggaagatgaagaggacacctattacaccaaggacctccca
gcccacgcctgcagctactgtggaattcatgatccagcatgtgtggtctactgcaacacc
agtaagaaatggttctgtaatggacgtgggaatacctctggcagccacattgtgaaccac
cttgtcagggcgaaatgtaaagaagtgactctccataaggatggtcctcttggggagacg
gtcttggagtgctacaactgcggctgtcgcaatgtcttcctgctgggcttcatccctgcc
aaggctgattcggtggttgtgcttttatgcaggcagccctgtgccagtcagagcagcctg
aaggatattaactgggacagctctcagtggcagcctcttatccaggaccgctgtttcttg
tcctggctggtgaagattccttctgagcaggaacagctgagagccaggcagatcaccgct
cagcaaatcaacaaactggaggagctctggaaggaaaaccctacagccactttagaggac
ctggagaaacctggtgttgatgaagagcctcagcatgtcctgctgcgctatgaggatgca
tatcaataccagaacattttcggccctcttgtcaagctggaagcagactatgacaagaaa
ctgaaagagtcccagacccaagataatattacagtcaggtgggacttgggcctgaataaa
aagcggattgcatatttcacccttcccaagactgattcagacatgcgtctgatgcaaggc
gatgagatttgtctgagatacaaaggcgacctggctcccctctggaaagggattggacat
gtcatcaaagtcccagacaattatggagatgaaattgcaattgagctgagaagcagtgtt
ggtgctcctgttgaagttccgcataacttccaggttgactttgtttggaaatcaacctcc
tttgacaggatgcagagtgccctgaaaacctttgctgtggatgagacatcggtatctggc
tacatttaccacaaactgctggggcatgaagtggaggatgtcatcatcaagtgtcagctg
ccaaaacgcttcactgcacaggggctgcctgacctgaaccactcgcaggtttatgccgta
aagacggtactgcagcgaccactcagcctcatccaagggcccccaggaacaggaaaaact
gtaacctctgctaccattgtgtaccatctcgccagacaggggaatggacctgtgttggtg
tgtgcaccaagtaacatagctgtggatcagctgacggagaagattcaccagactggactt
aaagttgtgaggctttgtgccaaaagccgagaagctattgattctccagtatccttttta
gctttgcataatcagatccgcaacatggatagtatgccagagcttcagaaactacaacag
ctaaaggatgaaactggagagctgtcatctgctgatgagaagcgctatagagctctgaag
cgcacagctgaaagggaattgctgatgaatgcagatgtgatctgctgcacttgtgtcggt
gccggagacccacgtttggccaaaatgcagttccgctccatcctgattgatgagagtacc
caagccactgagcctgagtgtatggtgcctgtagtgttgggtgcgaaacagctgatactt
gttggtgaccactgccagctgggccctgttgtgatgtgcaagaaagcagccaaggcgggc
ctgtctcaatccttgtttgagcgcctggtagttctgggaatccgtcctattcgcctgcaa
gtgcagtaccgcatgcaccctgccctcagcgccttcccatccaacatcttctatgagggc
tctcttcagaatggagtcacagcagctgaccgtattaagaagggctttgatttccagtgg
ccacagccggacaagcccatgttcttctatgtgactcaaggacaggaagaaattgcaagt
tcaggaacctcttatttgaacagaactgaagctgccaatgtggagaagatcaccacaaag
ctattgaaagcaggagccaaacctgaccagataggcattattacaccttatgagggacag
cgctcctacctggtgcagtacatgcagttcagcggctctctgcacacaaaactttatcag
gaggttgagattgccagtgtggatgctttccaaggacgtgaaaaagacttcatcattctg
tcttgtgtcagagccaatgaacatcagggaattgggtttttgaatgatcctcgacgtctc
aatgttgctcttacaagggccaggtatggcgtgattattgtaggaaaccccaaggctttg
tctaagcagcccctctggaatcaccttctcaactactataaggagcagaaggttttggtg
gagggaccattgaacaacctgcgagagagccttatgcagttcagcaagcctcgcaagctt
gtcaacaccatcaatcctggggcgcgcttcatgagcactgcaatgtatgacgcccgtgaa
gccctcatccccggatcagtgtatgatagaagtaacacagggcgtccgtcaaacatgtac
tttcaaacacatgatcagattggaatgattggtgctgggcccagccatgttgctgccatg
aacattcccatccccttcaacctggtgatgccaccgatgcctccccctgggtatttaggg
caggctaatggcccggcagtaggtagaggagccccaaaaggtaaaccaggccgtggagga
cgccagaggaatcgtgggatgggcaatcagggaaacaaccaatctaatctgcccaacagc
caggccagtcaagatgtggtctcccagcccttttcacagggccccctaactcagggctac
atctccatgagccagccttctcaaatgagccagccagggctttcccaacctgaattgtcc
caggacagttatttgggtgatgaattcaaatcccagattgatatggctctgtcgcaggac
tcgacttaccagggtgaacgtgcataccaacatggtggagtgactggactgtcacagtac
tag
DBGET
integrated database retrieval system
