Lepisosteus oculatus (spotted gar): 102692816
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Entry
102692816 CDS
T07349
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102692816 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102692816 (ddx46)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102692816 (ddx46)
Spliceosome [BR:
loc03041
]
Complex A
U2 snRNP components
U2 related factors
102692816 (ddx46)
Complex B
102692816 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
102692816
NCBI-ProteinID:
XP_015205033
Ensembl:
ENSLOCG00000010169
LinkDB
All DBs
Position
LG6:complement(26434206..26449576)
Genome browser
AA seq
1042 aa
AA seq
DB search
MGRESRHYRKHSASRGRSGSRSRSRSPEKRSKREERARSRSRDRERRRERSRSRDRRRSR
SRDRKRPRRSRSRERRRSRSRDRRRSCSRTRGRRSRSSSPSKSRKTDEGSKSKEKSDSTE
PSVEKKKIKEEKEEEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEL
EEMKQGKKWSLEDDDDDDEEAAAAAEPEEEAMEEVDEEQDPLDAYMEEVKEEVKKFNMGS
VKGGNDKKGGTTVTKVVTVVTTKKASSDANKKKGELMENDQDAMEYSSEEEEVDLQTALT
GYQTKQRKLLEPVDHQKIEYEPYRKNFYVEVPELAKMSQEEVNVYRLELEGITVKGKGCP
KPIKTWVQCGISMKILSALKKHNYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL
PMYRHILDQRPLEEAEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQ
IAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRMFDMGFEPQVMRIVD
NIRPDRQTVMFSATFPRAMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEENKFLK
LLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNG
ACRLLVATSVAARGLDVKHLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQV
RYAGDIIKALELSGTTVPPELEQLWASFKEQQKAEGKSIKKSSGFSGKGFKFDETEHALA
NERKKLQKAALGLQDSDDEDTALDIDEQIESMFNSKKRVKDLSAPGGGGGGGGGGSSGGA
NAPGGLASPAVPSAGNIEKLEIAKRLALKINAQKNLGAEAQDVMQQATNAILRGGTMVAP
SVSAKTIAEQLAEKINAKLNYIPVEKQEEEKQDTAQSETIKRYEEELEINDFPQTARWKV
TSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLI
KEELIRLQNSYQPTSKGRYKVL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgggtagagagtcgaggcactaccgcaagcactcagcttcgagggggcggtccggcagc
cgctccaggagccggtctccggagaagaggtcgaagcgagaggaaagggctcgctcccgc
agccgggaccgggaacgcaggcgagagcgctcccgcagccgtgatcggcgccgctcccga
tcccgggacaggaagcgtccgaggcgctccaggagtcgggaaaggcggcgatcccgcagc
cgagacaggaggaggtcttgtagcaggacacggggccggaggtcacgttcctcaagcccc
agcaagagcaggaagactgacgaagggtcaaagagtaaggagaagtctgatagcacagag
ccgtctgtggagaaaaagaaaataaaagaagaaaaagaggaagaaaaggtagaagaccaa
gactttgaccagaacaaactggaagaagaaatgaggaaaaggaaggaaagagtggaaaag
tggagggaagagcagaggaagaaagcgatggaaaacattggagaactgaagaaggagctg
gaggagatgaaacaaggaaagaagtggagtctggaggatgatgacgatgatgatgaggag
gctgcagcagctgctgagcctgaggaagaggccatggaggaggttgatgaggagcaggat
cctctggatgcctacatggaggaggtgaaggaggaagtgaagaagttcaacatgggcagt
gtcaaaggaggaaacgacaagaaaggaggaacgactgtaaccaaagttgttactgtagtc
acaacaaagaaagcctcttctgatgccaacaagaagaaaggggaattaatggagaatgac
caggatgctatggagtattcatcagaggaggaagaggtggatcttcagacagcactgact
ggctatcagaccaagcagcggaagctcctggagccagtggaccatcagaagattgagtat
gagccctaccgcaaaaacttctatgtggaggtaccagaactggctaaaatgtcacaagaa
gaggtgaatgtgtataggctggagctggaaggaatcactgtgaaggggaaaggctgtccc
aaacccatcaagacttgggtgcagtgtggcatttcaatgaagattttaagtgcactaaag
aagcataactatgaaaagcctacaccaattcagacccaggccattcctgccatcatgtcc
gggcgggatctgattggcatcgccaagaccggcagcggtaagaccatcgcctttctgttg
ccgatgtaccggcacatcctggatcagagacccctggaagaagcggaaggtccaatagcc
gttatcatgactcctaccagagaactggcccttcagatcacaaaggagtgcaagaagttt
tccaagcctctgggtctaagggtagtctgtgtgtatggaggaactggaataagtgagcag
attgctgagcttaagagaggagcagaaatcattgtctgcaccccaggaagaatgattgac
atgttaggtgccaacagtggtagagtcacaaacctccggagagtaacgtacgttgttgtt
gatgaagcagacagaatgtttgatatgggttttgagccacaggtgatgcgtatagtggac
aacatcaggcctgaccgtcagactgtcatgttctctgccaccttccccagagcgatggag
gccttggcccgcaggatcctgtcaaagcctgttgaagtacaagtgggaggcaggagcgtt
gtgtgctctgatgttgagcaacatgtgattgttatagaagaagagaacaagtttctgaag
cttcttgaaattctgggacattaccaggaaaagggctcagtcataatttttgtggacaaa
caagaacatgcagatgggctgttgaaagatctcatgaaggcctcctacccctgcatgtcc
ctccatggaggcattgaccagtatgacagagacagcattattaatgatttcaagaatggg
gcatgcaggctgcttgtagcaacatcagtagctgccagaggactcgatgtcaagcatctg
attttggtggtcaattataactgccccaaccactatgaggattatgtacacagagctgga
agaactgggagagctgggaataaaggatttgcctacacttttatcactgaggaccaggtt
cgatatgcaggtgatattataaaggctcttgagctctcaggaactactgtaccaccagaa
ctggaacagctgtgggccagcttcaaagaacaacaaaaagctgagggcaaaagcatcaaa
aagagcagcgggttctctgggaagggtttcaagtttgacgagactgagcacgcgctggcc
aacgagaggaaaaagctgcagaaagctgctctgggcctgcaggactctgatgacgaggac
actgctctggatattgatgaacagatcgagagcatgttcaattccaagaagcgggtgaag
gacctgtcggcgcctggtggagggggtgggggcggaggaggagggtcttcaggtggtgcc
aatgctccaggaggactggccagtcctgcagtgccctctgctggtaacattgagaaactg
gagattgctaagcgtctggctctcaagatcaatgcacagaagaaccttggagcagaagca
caagatgtgatgcagcaagccaccaacgcaattctgagaggaggcactatggtggctcca
tctgtctctgcgaagaccatagcagagcagctggctgagaagatcaatgccaagctcaac
tacattccagtggagaaacaagaggaggagaagcaagatactgcgcagtctgaaacaatc
aagagatatgaagaggagctggagataaatgacttcccacagactgccaggtggaaggtt
acctccaaggaggctctccagaggatcagtgagtactctgaagctgccatcaccatcaga
ggaacctacttccctccaggcaaggaacccaaagagggagaacgcaaaatctacttggcc
attgagagtgccaatgagttggcagtacagaaagcaaaagctgaaatcaccagacttatt
aaggaagagctcatcagactacaaaactcctaccagccaaccagcaagggaagatacaag
gttttgtag
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