Lepisosteus oculatus (spotted gar): 102697840
Help
Entry
102697840 CDS
T07349
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102697840 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
loc03400
]
102697840 (lig4)
Enzymes [BR:
loc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102697840 (lig4)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102697840 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
BRCT_3
Motif
Other DBs
NCBI-GeneID:
102697840
NCBI-ProteinID:
XP_006639224
LinkDB
All DBs
Position
LG17:complement(23601835..23607818)
Genome browser
AA seq
958 aa
AA seq
DB search
MLGPLTSFFMRFSAMYKRISTSCVKYISQQKCSSVICMQLTRIVSRMAEAAQSLSAPENT
VASQVPFAHLCTTLEKIQRTKTRPEKTRHLKDFIDSWRGFHAALHKNDPNTTDSFYPAMR
LILPQLERERMAYGIKENMLAKLYIEVLGLPKDGGEAKKLLNYRAPTTSQGEAGDFAVMA
YFVIKKRCPDQGTLTIKEVNDFLDSVASNNAGKRKDLVKKNLLQLITQSSALEQKWLIRM
ILKDMKLGISKETVFRVFHLDATELHNVTTDLNKVCRELHDPSVSLNNVSIGLFSAFKPM
LAAVANIKQIEKQMNNQSFYIQTKLDGERMQLHKDGDVYKYFSRNGYDYTQQFGGSPLEG
SLTPFIHNVFKSHIISCILDGEMMAYNPTTQTFMQKGSKFDIKRMVEDSDLLTCFCVFDV
LLVNNQKLGHETLRKRNETLETVLTPIPGRIHIVPKIEARSKQEVIDSLNEAIDKREEGI
MVKDPLSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGLRGGMMSHFLCAVAE
TPANGEKPSVFHSFCRVGSGYTMKELYDLGLKLAKYWKPYRKKDPPATVLCGTEKPEVYI
DPCKSVIIQVKAAEIVDSDMYKTECTLRFPRIEKIRDDKEWYECMTLKDLDLFRDKASGK
LASRHVHLSDEPDKKKRKVVSKPKKVIGIIDHLKSQDLSCVSKVSDMFEDVEFCVMSGNE
KYAKADLEKVVAQCGGVIVQNPGKDTYCVIAGVQNVRVKNLISANEYDVVQTEWLLECLE
KKECVPWQPRHMIHMSPSTKQHFATEYDCFGDSYYADTDEKELKEVFSRISKTEVDEKAS
LYDIADIESRYSWDTLTNTMFRHLRVYVDRYAVIGDLSSLIHGSSLDIRALELRFHGAHV
TSKFEEGISHVIVSDQAHVLDLKSLRRCFTKKFKIVSELWVVDSVKAGHLQNDCDYLI
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgttgggcccattgacaagtttcttcatgagattcagtgcaatgtacaagagaataagt
acaagttgtgtaaaatacatttcacagcagaaatgttccagcgtgatctgcatgcaatta
acaagaatcgtttcgagaatggccgaagcagctcaatccttgtctgcgcccgagaacaca
gttgcatctcaagttccgtttgcacacttgtgtacaactttagaaaaaattcagcgaaca
aaaacaaggccagagaaaacaagacacttgaaagactttatagattcctggagggggttc
catgcagcgctccacaagaatgaccccaacacaactgattcattttacccagcgatgcgg
cttattcttccgcagctggaacgtgagagaatggcttatgggataaaggaaaacatgctt
gccaaactttacattgaagttttgggcttgccgaaggatggtggggaggcgaagaaactc
ctaaactatagagcacccactacatcacagggagaggcaggcgactttgctgtcatggct
tactttgttatcaagaaaaggtgcccagaccaaggaacgctaaccataaaagaggtaaat
gatttcttggattccgttgccagcaacaatgctggaaaacggaaggaccttgtaaaaaaa
aatctcctgcagcttatcactcaaagctcagctttggagcaaaagtggcttatccgtatg
atccttaaagacatgaaactgggaatcagtaaggaaactgtcttccgtgtctttcatttg
gatgctacagagctgcacaatgttaccacagatcttaacaaagtatgcagagaacttcac
gacccttcagtttctcttaataatgtttctattgggctgttttcagcatttaaacccatg
cttgctgctgttgcaaacataaagcaaattgaaaagcaaatgaacaaccagagtttttac
atccaaaccaagctggatggggagcgcatgcagcttcacaaagatggcgatgtgtataag
tacttctcgcgcaacgggtatgattacactcagcagttcgggggctctccgttggaagga
tctttgactccttttattcacaatgtcttcaagtcccatattataagctgcattttagat
ggtgagatgatggcatataatcccactactcagacattcatgcaaaaaggtagcaagttt
gacatcaaaagaatggtggaggattcagatttgctgacatgtttttgtgtgtttgacgtt
ctgttggtgaacaaccagaaactgggccacgagaccctaagaaaacgaaatgaaactctt
gaaaccgtcttgactcccattccaggaaggatacacattgtacccaaaattgaagcaagg
agcaagcaggaagtcatagattccctcaatgaagccatcgataaaagagaagagggaatc
atggtaaaggatcctttgtctgtttacaagccagataagcgaggagagggatggctcaag
ataaagccagaatatgttgatggtctgatggatgaacttgacctcttgattgttggaggt
tactggggaaaaggccttcgaggtggaatgatgtctcattttctgtgcgctgtagctgaa
acgcctgcaaatggtgaaaagccatctgtgtttcattctttttgtcgtgttggttcaggt
tatacaatgaaagaactttatgacctgggcctgaaactggcaaagtactggaagccctac
cgtaagaaggatccaccagctactgtattgtgtggaacagaaaaaccagaagtttacatt
gacccctgcaaatcagtgataatccaggtgaaggctgctgaaatcgtggatagtgacatg
tataaaacggaatgcactttgcgctttcctaggatagaaaaaataagggatgacaaggag
tggtatgagtgtatgacgctgaaagatttggacctcttccgtgacaaggcttctggaaag
ctggcatcccgtcacgtgcatttaagtgatgagcctgacaagaagaaacgaaaagttgtg
tcaaaacctaagaaggtcattggtataattgatcacttgaagtcccaggatctttcctgc
gtaagcaaagtttcagatatgtttgaggatgtggagttttgtgtcatgagtggaaatgag
aagtacgcaaaggcagacctcgaaaaagtagtggcccagtgcgggggagtcatagttcag
aatcctggcaaagatacttactgtgtaattgctggtgtacaaaatgtgagggtgaaaaat
ctaatttcagcaaacgagtatgatgtagtccagacagagtggcttttggagtgcttggag
aagaaagaatgtgtgccatggcagcctcgtcacatgatccatatgtccccatccacaaaa
caacactttgcaacagagtatgattgctttggggatagctattatgcagacacagatgag
aaagaactgaaggaggtcttcagcaggattagtaaaacggaagtagatgaaaaagcctct
ttgtatgacattgctgatatagaatcaaggtattcatgggatactttgacaaacaccatg
ttcaggcatttgagagtttatgtagatcgctatgctgtcattggagatttaagcagctta
atccacggatcgagtttggacattcgggctctagagctcaggtttcatggagcgcatgta
acctcaaaatttgaggaagggatctctcatgttattgtgagtgaccaagcccatgtgtta
gatttgaaaagtctaagaagatgttttaccaagaagtttaaaattgtgtcagaattatgg
gtagtcgattcagtaaaagcagggcatttgcagaatgactgtgattacttaatttag
DBGET
integrated database retrieval system
