Leptotrichia sp. oral taxon 847: AXF11_05605
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Entry
AXF11_05605 CDS
T04653
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lot
Leptotrichia sp. oral taxon 847
Pathway
lot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXF11_05605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lot03400
]
AXF11_05605
Enzymes [BR:
lot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXF11_05605
DNA repair and recombination proteins [BR:
lot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXF11_05605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_30
EMC3_TMCO1
Motif
Other DBs
NCBI-ProteinID:
AMD95098
UniProt:
A0A0X8JV18
LinkDB
All DBs
Position
1210769..1213885
Genome browser
AA seq
1038 aa
AA seq
DB search
MEFLNFLKQIDKSFFAKLNEKDKVYRGEIPWILQQSKAKKIIYISTSNKNLENYYSMLDN
YYNEKNIFSKNSDKDTKYIDIFENILQTKEDIVGINVKMLDILRNQDKFILFMNLQIALD
IFFEKVNFLEFKIGSEYKFEKIKKFFLENGYESSYLVEKKGQFSQRGDIVDIFPPDLENP
VRLEFFGDELESIRFFEVDSQISIEKIKEIKIFGNILSGSEYELVEMISEINNDEVLIAV
ENKELIDYKMEEYILLNRKKENLYRKRYENLKKKSFFISTKNFSKEQLETFKDKEKLEKL
ANKNKIFIQTKNYEKKYSEYNHILKKNQNNFFVSNFELFEGFFSEKNKSFVLTDRELDGY
IYENFRKIKKSIKYKKLNQILVDDYVIHIQYGVGIYKGIQTIDDKDYLKVKYADEDILYI
PVEKLDRLEKYISNDLEPKLFRLGTSGFKRKRKKLEEDIQKFAAELIKIQARRKRQTGFI
YQKDTVWQEEFEESFPFEVTPDQRKAIDDVKSDMESPKIMDRLVCGDVGYGKTEVAMRSA
FKAIDNGKQVILVAPTTILAQQHFERFKKRFENYPIIIENLSRLTKSKSGEILKNLKNGI
VDLVIGTHRLLSNDVVFNNLGLLIIDEEQKFGVKAKEKLKEKKDKLDVLTLTATPIPRTL
NLSLLGIRDISIIDTPPVNRLPIITEILEWDENKVKMAILKELSRDGQVFYIYNDVKNMK
NKVQELREIVPDFVKIEFIHGQLPPQEIKDKLIRFENGDFDILVASTIIENGIDIPNVNT
ILIENFTGLGLAQVYQLKGRVGRSNRQGYCYLLKTRNTTKLGKQKEESLFKVEGIKSGGF
QISVEDLKIRGAGEILGDKQHGTIETFGYDLYIKMLNEEIQRQKGEFSEKVENVEIILFD
QGFIPENYIQNEEKLNIYRRFATLSSNEELKDLVFEIKDRFGKIPESLKKFIMSIKFKLF
AQKNKIKRILEVKSGYRLYFLKDCENELKNLSKKIKVEKVEMLKVLGKNKKAQNEEDFVV
VEVLKKEFLEIVKRGEKL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggaatttttaaattttttaaaacagatagataaaagtttttttgcaaaattaaatgag
aaagataaagtgtatcgaggggagattccgtggattttgcagcaatcaaaagcaaaaaaa
ataatttatatttcaacttccaacaaaaatttggaaaattattattcaatgctagataat
tattataatgagaaaaacattttttctaaaaattcagataaagatacaaagtatattgat
atttttgaaaatattttgcaaactaaagaagatattgtcggaatcaatgtaaaaatgctg
gatattttaagaaatcaagataaatttattttatttatgaatttacaaattgcactcgat
attttttttgaaaaagtaaattttttggaatttaaaattggaagcgaatataaatttgaa
aaaataaaaaagttttttttggaaaatggatacgaaagttcttatttagttgaaaagaag
ggtcagtttagccaacgtggggacattgtcgatatttttccaccagatttggaaaatcct
gttagacttgagttttttggcgatgaattagaaagtattagattttttgaagttgacagc
cagatttcgattgaaaaaattaaggagataaaaatttttggaaatattttgagcggaagc
gaatatgagctagtcgaaatgatttcggaaataaataatgacgaagttttaattgctgtc
gaaaataaagaattaattgactataaaatggaagaatatattttgttaaatcgaaaaaaa
gagaatttgtatcgaaagaggtatgaaaatttgaagaaaaaaagtttttttatttccaca
aaaaattttagtaaagaacagctggaaacttttaaagataaagagaaactggaaaaattg
gcaaataaaaataaaatttttattcaaacaaaaaattacgaaaaaaaatattccgaatac
aatcacattttgaaaaaaaatcaaaataatttttttgtttcaaattttgagttatttgaa
ggattttttagtgaaaaaaataaaagttttgttttgacggacagggagcttgatggctat
atctatgaaaatttcagaaaaataaaaaaatctataaaatataaaaagctaaatcaaatt
ttagtagacgactatgtgattcatatccagtatggagttggaatttacaaaggaattcag
actattgatgacaaggactatttaaaagtaaaatatgccgatgaagacattttatacatt
cccgttgaaaagttggacaggcttgaaaaatatatttctaatgatttggagcccaaatta
tttcgtctgggaacttctggattcaaaagaaaacgaaaaaaattggaagaagacattcaa
aaatttgcagctgaacttataaaaattcaagctagaagaaaaagacaaactggatttatt
tatcaaaaagatacggtttggcaagaggaatttgaagaaagttttccatttgaggttaca
cctgatcagagaaaggcgattgacgatgtaaaaagtgatatggaaagtcccaaaattatg
gataggctcgtctgcggcgatgtcggttacggcaaaactgaagttgcgatgcgttcagca
tttaaagctattgacaatggaaaacaagtaattttggtagctcctactacaattttggct
cagcagcattttgaaaggtttaaaaagcgatttgaaaattatccgattatcatagaaaat
ttgtcaagacttacaaaaagtaaatcaggtgaaattttgaaaaatttaaaaaatggaatt
gtggacttggttattggaactcacagacttttgagcaacgacgttgtctttaataatttg
ggacttttaatcattgacgaagaacagaagtttggagtaaaagcgaaagaaaaattaaaa
gaaaaaaaggacaaactggatgttttgacattgactgcaaccccaattccaagaacgcta
aatttgtcgctattaggaatacgggatatttcaatcattgacacgccgccagttaataga
cttccaataataacggaaattttggagtgggacgaaaataaagtaaaaatggcaatttta
aaagaattgtctcgagatgggcaagttttttatatctataacgatgtaaaaaacatgaaa
aataaagtgcaggaactaagagaaatagttccagattttgtaaaaatagaatttattcac
ggacagcttccgccgcaggaaattaaagataaacttattcgctttgaaaatggagatttt
gatattttagttgcttccacgattattgaaaatggaattgacattccgaacgtaaacacg
attttaatagaaaattttacaggacttggattggctcaagtttatcagctaaagggtcgt
gtaggacgaagtaatagacagggttactgctatttgttaaagacaagaaacacaacaaaa
ttgggaaaacaaaaagaagagagcctctttaaagtggaaggaataaagtctggcggtttt
caaatttctgtcgaagatttaaaaattcgtggtgccggggaaattttgggggacaagcag
catgggacaattgaaacttttggctacgatttgtacataaagatgttaaatgaagaaatt
cagcgtcaaaaaggggaatttagcgaaaaagttgaaaatgtggaaattattttatttgac
caaggatttattccagaaaattatattcaaaatgaagaaaaattgaatatttatcgtcgt
tttgccacactttcatcaaatgaggaactaaaagatttagtttttgaaataaaagacaga
tttggaaaaattccagaaagtttgaaaaagtttattatgagtataaaatttaagttattt
gctcaaaaaaataaaataaagaggattttggaagtaaaaagtggctatagattgtatttt
ttaaaggattgtgaaaacgagctaaaaaatttatctaaaaaaataaaagtagaaaaagtg
gaaatgctgaaagttctaggaaaaaataaaaaggctcaaaatgaggaagattttgttgtt
gtggaagttttgaaaaaagagtttttagagattgtgaaaagaggagaaaagctgtga
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