Legionella pneumophila 2300/99 Alcoy (serogroup 1): lpa_01440
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Entry
lpa_01440 CDS
T01232
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpa
Legionella pneumophila 2300/99 Alcoy (serogroup 1)
Pathway
lpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lpa_01440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpa03400
]
lpa_01440 (mfd)
Enzymes [BR:
lpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lpa_01440 (mfd)
DNA repair and recombination proteins [BR:
lpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
lpa_01440 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
DUF1474
Helicase_C_2
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADG24287
LinkDB
All DBs
Position
complement(1132316..1135777)
Genome browser
AA seq
1153 aa
AA seq
DB search
MNTKTLLYQPTKNKQIWGQLYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFF
LNPNQNPQELLFFPDWETLPYDQFSPHQDIISERLYTLSRIQQITNGIIISSASTLMHRL
SPPEFLNQYALMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPMGSG
LPFRIELFDDEIESLREFDPETQRTIEKINQIHLLPAREFPLNEQSQLHFRRAFRESFPG
NPSHCPIYEAISNSQFPSGIEYYLPLFFDKTVTFFDYLPANAKICLIEEIQENAERFWRE
LNERYEQRRHDVSRPILTPDNCFINPTELLTKANNYEQVRLYHKPSEKKGALNFNIAKAP
QLPIDRKNIEPLRQLSEYCSDPTRRYLIVVESAGRREVLLDLLKSSHIIPRTQHSWLDFI
HDESPINITTGPLIYGCELTDKQIVIIVESQLFGEQSTPQRRSTQKSVDPDLIIRDMAEL
RLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAYAGDDKIYVPVTSLHMISRYTGVDS
EHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGF
PFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP
TTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNN
ISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAK
IQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYI
GDIHNRLIMYKRIANAKTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAAQLGIQK
ISASAQQGKLDFSEKPSIDPGTLISLIQVHAKRYQMEGPQRLRFTLDSTSAEERIFEISS
LLNKLSPHSQTID
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaaacgctactttaccaacccacaaaaaataaacaaatatgggggcaactc
tatggtagcagtctggcacttgctttagctgaatattgccaacaaacacccgggatcaaa
ttacttattacgcaagacaacctatgcgccagtcagttgcaggatgaactacaatttttt
ctaaacccgaaccaaaatccccaggaattattattttttcccgactgggaaaccttgcct
tatgatcaattctctcctcatcaagatattatttcagaaagactctacaccttaagcaga
attcaacaaattaccaatggaatcatcatttcttcagccagcactttaatgcacagactt
tctccgccagagtttttaaatcaatacgctttaatgcttaaagaggggcaaaagcttgat
ctgaactcgttcaggaatcagttgcaacaagcaggataccattgtgttaataaagtgctt
gaacatggtgaatacgcactacgtggatctattattgacgtgtatccgatgggtagtggt
ttacctttccgtatcgagctatttgatgatgaaattgaaagtctcagagaatttgatccg
gaaacacaacgcacaatagaaaaaatcaatcaaatccatttgttacctgctcgtgaattt
ccattaaatgaacaaagccaattacacttccgacgtgctttcagagagtcttttcctgga
aatcccagccattgcccaatatacgaagcaattagtaacagtcaatttccatctggcata
gaatattatctgcccttgttttttgataaaaccgttaccttttttgattatctgccagcc
aatgccaaaatttgtttaattgaagaaatccaggagaatgctgagagattctggcgagaa
ttaaatgaacgctatgaacaacggcgtcatgatgtcagccgtcctattttaaccccagat
aactgctttattaatcccaccgagttattaaccaaagctaacaattatgaacaagtacgc
ctgtatcataaaccttccgaaaaaaaaggagccttaaatttcaatattgccaaagctcca
caactacccattgacaggaaaaatattgagccactccgccaattaagtgagtattgttca
gatccaactcgacgctatcttattgttgttgaaagcgctgggcgtcgcgaagtattactg
gatctgcttaaatcaagccatatcattccaagaacacaacactcgtggttggacttcatt
catgatgaatcccccatcaatataactactggcccattgatttatggctgtgaattaacc
gacaaacaaattgtgatcatcgttgagtcgcaattatttggtgagcaaagcacacctcaa
cgccgaagcactcaaaaatcagttgatcccgacttaatcatacgagatatggccgaactt
cgattgggcgctcctgttgtacatcttcaatttggagtaggtcgctatcaaggtttgcaa
tacatcgactccaatggtacccccagtgagttcctcgtccttgcttatgcaggggatgac
aaaatctatgtcccagtcacctctctgcatatgataagccggtatactggtgtggacagt
gaacacgcccctttgcataaactgggttctgatcaatggcaaaaggaaaaaaagaaagcg
gccgagaagattcatgatgttgcaattgaattattggatctctatgctaaaagagaagcc
cagccagggcaccaatacgatttcaatcaatccgaatatataaaattcgccagtggcttc
ccctttacagaaacaccagatcaacttcaggctattgaacaaattattagggacatgcaa
tcaccaagaccgatggatcgcctaatctgtggtgatgtaggatttggcaaaacagaagtc
gccatgcgtgctgcatttgtagcagtacaaaatggaaaacaagtctgtatccttgctcca
actaccttgcttgcaggacaacattttgagtcatttcgcgatagatttgcagagtttcct
gttaatattgaattattatcccgttttcgcagtaataaagagtccgaagcagtccttgcc
gcattgcaatcaggtaaagtagatattgtgattggaacccataaattattccaaaataat
atttctttcaaaaacctgggattactgattattgatgaagaacatcgatttggagtgaaa
caaaaggaacatattaaatcgcttcgtactcatgttgatattttatccatgactgctact
ccaattcccagaactttgaacatggcaatggcgggaatcagagatatttcacttattgca
acaccgcccgccaagcgtttggcgattaaaacattttggcaagaaaaaaatgatctcacc
atacgagaagcgatattgcgcgaaatattaaggggagggcaagtattttacctgcacaat
aatgtacaaactatagaaagagtttgccaggatctggaagctttagtgcccgaagcaaaa
attcaaagcgcacatgggcaaatgcgagaaaggcaattagagcgcatcatgtctgatttt
tatcatcaccgatttaatgtcctggtttgcacaaccatcattgaaacagggatcgatatt
ccaacggccaataccattattatcgatcgtgccgataaatttggattagcccagctgcat
caattacgtggtcgtgttggacgctctcatcatcaagcctacgcttacttattaactccc
aatgaaaaactgttaacgccagatgcagtgaaacgtctcgaagccattgtgtctttagaa
gatttgggagcaggattcaccttggcaacacacgacctggaaattcgtggagcaggtgaa
ctccttggtgaagaacaaagtggtaatatgcatgccataggatttaatttatttatggaa
atgcttgaccgtgccgttaacgatttaaaggcaggcaaaactcctgaattgtcagcacca
atgcatcaaggacctgaaattgacttgagaattagcgcgattatccctgaagattacata
ggtgatatacacaatagactcatcatgtataaaagaattgctaatgcaaaaactacccaa
caacttagagaactacaaatagaactgatagaccggtttggtttactcccacaaccagtc
aaacatctctttttgattactgaattaaagttaaaagctgcacagctcggtattcaaaaa
atcagtgccagtgctcaacaaggtaaattggattttagtgaaaaaccatcgattgaccct
ggaacactgattagcttaatacaagtacatgccaaacgctatcaaatggaaggaccacaa
cgtctgcgttttactttagacagcacgtcagcagaggaacgaatatttgaaatcagttct
ttattaaataaactgtctcctcattcccaaacgattgactga
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