Lysinibacillus pakistanensis: GDS87_13205
Help
Entry
GDS87_13205 CDS
T06280
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lpak
Lysinibacillus pakistanensis
Pathway
lpak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GDS87_13205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpak03400
]
GDS87_13205
Enzymes [BR:
lpak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GDS87_13205
DNA repair and recombination proteins [BR:
lpak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GDS87_13205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Ribosomal_L32p
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGG51839
LinkDB
All DBs
Position
complement(2757384..2759207)
Genome browser
AA seq
607 aa
AA seq
DB search
MKPMLLTEALDIPEGDEWLYETKYDGFRCLLEWVEQPMLISRNGNNLNHLFPEIIAFCQH
ISDQVRPFLPLLLDGELVYLINNYKSEFSVVQKRGRMQNEGVIAEHANSFPIHFIVFDVL
IYQGESLTNRYLKTRKQQLINLFMALKLPLTINYEDQHSLQAIASTEQYQSLWHAIKVNN
GEGLVAKKKTSKWMEDTRSSHWLKIKNWHLVAVIVTHYNHSNGYFHGAVYLQQQLVEIVN
FRHGMTEEEHKTLVAFFQANGQRNNEIWQLEPSICVDIACIDFDGTKLREPRFSKFRLEL
APEDCQWQHMLRQLFPIPETVSITHPDKPVWPAIGINKDNYLHYLQMISRYILPFLHNRP
LTLIRFPHGAPGESFYQKSSPEKIPEFVSTGWMDEINYLVCNNLETLLWLGNQLALEFHI
PFQTLQTIHPTEIVFDLDPPSVEYFSLAIKGALDLKEIIDFFKLQSFVKTSGGKGLQLYI
PLPENIFSYDEVRIFTEFICKFLCEQKPDLYTIERLKKNRHQRLYLDYIQHAEGKTIIAP
YSTRGNEKGLVATPLYWEEIQPQLTPDLFTIPAVLERMKKVGNPFKHFRQIGENQDFQSV
LDHLKNS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccaatgcttttaacagaggcacttgacattcctgaaggagatgaatggctttat
gaaacaaaatatgatggttttagatgtctattagaatgggtcgaacagccaatgcttata
agtagaaatggcaataatttaaatcatttatttcctgagattattgctttttgtcagcac
atttcagaccaagtgaggccctttttaccattattacttgatggagagctagtttattta
atcaataattataaaagtgaattttcggttgtccaaaaaagagggaggatgcaaaacgaa
ggggtgattgcagaacatgctaactcgtttccgatccattttattgtgtttgatgtacta
atttatcaaggtgagtcactaacaaatcgttatttaaaaacacgaaaacaacagcttatt
aacctttttatggctttaaagcttcccttaacgataaactatgaggatcagcattcattg
caagcaattgctagtactgagcagtatcagtctctttggcatgccataaaagtgaacaat
ggtgagggcttagtggctaagaaaaaaacgagtaaatggatggaggacacacgatcttca
cattggctaaaaattaaaaattggcatctcgtagccgttatcgttacacattacaatcat
agtaatggttattttcatggggcagtgtacctgcagcaacaattagtagagatcgtcaac
tttaggcatggcatgacagaggaggaacataagacccttgttgctttttttcaagcaaat
ggtcaacgaaataatgaaatttggcagttagagccttctatttgtgtagatatcgcctgt
attgattttgatggtactaagctacgagaaccaagattctctaaatttcgcttagaactt
gcaccagaggattgtcaatggcagcatatgctacgacagttgtttccaataccagagaca
gtaagcataacacatccagataagcctgtatggccagcgattgggattaacaaggataat
tatttgcactatttacaaatgatttcacgatatattttaccatttcttcataatcgccct
ctaacattaattcgttttccgcatggggcccctggtgaaagcttctatcagaagagtagt
cctgagaaaatacctgaatttgtgtcaacagggtggatggatgaaattaattatctagta
tgtaataatcttgaaactttattgtggctcggcaatcagcttgcgttagagttccacatt
ccatttcaaacattgcaaacaatacatccgacggagattgtttttgatttagatcctcct
tcagtggagtatttttcactggccattaagggagcacttgatttaaaggaaatcattgac
ttttttaagctgcaatcttttgttaaaacatcaggaggtaaaggcttacagctttatatt
ccattgcctgaaaacatattctcctatgatgaggtgagaatatttactgaattcatctgt
aagtttctctgtgagcaaaaaccggatttatatacaatagagcgattaaagaaaaataga
catcaaagattgtatttagattatatacagcatgcggaaggaaagacgattatcgctccc
tattccacacgtggaaatgagaaagggctagtagcaacaccgttatattgggaagagatt
cagccacagctaacaccggatctttttacaattcctgctgtgttggagcgtatgaaaaaa
gtagggaacccttttaagcattttcgtcagataggggagaatcaggattttcaatcagtt
ttagatcatttaaaaaattcctaa
DBGET
integrated database retrieval system
