Leeuwenhoekiella palythoae: LDL79_02040
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Entry
LDL79_02040 CDS
T07563
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lpal
Leeuwenhoekiella palythoae
Pathway
lpal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LDL79_02040 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpal03400
]
LDL79_02040 (ligD)
Enzymes [BR:
lpal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LDL79_02040 (ligD)
DNA repair and recombination proteins [BR:
lpal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LDL79_02040 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
RS4NT
SHD1
Motif
Other DBs
NCBI-ProteinID:
UBZ12163
LinkDB
All DBs
Position
488067..490496
Genome browser
AA seq
809 aa
AA seq
DB search
MGLEEYKRKRDFSKTPEPAADIHSKSAGRFVIQRHRASRLHYDLRLEFDGVLKSWAVPKG
PSLNPADKRLAVQTEDHPIRYLTFQGTIPKGNYGAGKMTIWDEGTYTIAPGYPEDALKQQ
FEKGDLKLLFFGTKIKGTFALVHTKRKNADNHWLLIKKQDSYATNLHYDAELLANRDPAS
DTTLVPTQKLTPFQFIRPMLASTTKTIFNDPEWVYELKWDGYRVLAHIKDGKVHLHSRNG
INYTTTFDILKQDLESVEHDTILDGEVVIVDAEGLPQFQALQNYTHTTSGTLRYYVFDML
HLNGHDMLNLPLLDRKSLIPEVIAGCESTLYCSHIEDMGAALYKKAVDAGMEGVIAKHKQ
STYTPGYRSEKWLKIKHRLTEETLICGYTESDSSGKLFGSLILGMYAEDKLKYVGNCGSG
FNTQEQHWLMKQLKKLGVAENPFGKKINLKGRKPNWTSPQLICEVHFSEWTSNRIMRHPV
YKGLRNDKIPHEIHIQKPHSAAKQTQSSAETGLDVGGHQVKFTNLEKIYWPASGFTKYDL
IDYYIQVSAYILPYLKDRPQSLHRHPDGIDQKGFYHKDHDHLPAWMDTVSVFSKSSDRMI
NYLLCQNEAGLLYMANLGCIEINPWNSRVGKLEKPDYAIIDLDPSDTNTFEEVITVAQAV
KEILDQAGIQGFCKTSGSSGLHIYIPLAAQYSYAEARNFTKLLCMYVEEKVPKLSSMART
IKDRKGKIYLDYLQNRKGQTLAAPYCVRPKPGATVSAPLEWKEVKAGLQINQFTIKTMLD
RLAEQGDLFAGVLGMGIDMAAALKKLDTA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggggctggaggaatataaacgtaaaagggactttagcaaaactccagaacccgctgca
gacatccactctaaatcagcgggtcgttttgtcattcaacggcatcgggcttctcgtttg
cattacgatctgcggctagagttcgatggggtgctcaaaagttgggctgtgcccaaaggt
ccttcgctcaatcctgcagacaagcgccttgcggtgcagactgaagatcatcctatacgc
tatctaacttttcaaggcactatcccaaaagggaattatggcgccgggaaaatgaccatt
tgggatgaaggcacctataccatagcacccggatatcccgaggatgccctgaagcaacag
tttgaaaaaggcgacttaaaacttcttttttttggcaccaagataaaaggaaccttcgct
ctggtgcataccaaaagaaaaaatgctgataatcattggttactcattaaaaaacaagat
tcttatgctaccaatttacactacgatgcagagttacttgcaaaccgtgacccagcatca
gacaccactttggtccctacccaaaaactcaccccctttcaatttattcggcctatgctg
gcctccactactaaaacgatatttaatgatcccgagtgggtatatgaactcaaatgggac
ggttatcgggttctggcacatattaaggatgggaaggttcatctgcattcgcgaaacggg
atcaactatacaacaacgtttgacatactaaaacaggatttagagagcgttgagcatgat
accattctggatggtgaagtggtcatcgtagatgctgagggcttaccgcagtttcaggcg
ttgcagaattatacacatactacatcaggcacattgcgctattatgtttttgatatgctc
cacctcaatgggcatgacatgctcaacctcccccttttagatcgtaaaagtctgattccg
gaagtcatcgcaggatgtgaatctaccctgtattgctctcatattgaggatatgggtgct
gcactctataagaaggctgttgatgcgggaatggaaggcgtcatcgctaagcataaacaa
tcaacctatacaccgggataccgttctgaaaaatggcttaagatcaaacataggcttacc
gaagaaactctgatctgcgggtataccgagtcagatagcagcggtaaactgtttgggagt
ctgattctaggtatgtatgctgaagacaaactgaaatatgtgggcaattgtggttccggg
tttaacactcaagagcaacattggctgatgaagcagttgaaaaaactaggggtagctgaa
aacccctttggtaaaaagataaacctgaagggccgaaagccaaactggacaagtccgcag
ttaatttgtgaagttcacttttccgaatggacgtcaaaccgtatcatgcgccatccggtt
tataaaggtcttcggaacgataagattccgcatgagattcatattcagaaaccacattcc
gcagctaagcaaacacaatccagcgctgaaacaggtctagacgtaggcggacaccaagtt
aaattcaccaatctggaaaaaatatattggcctgcttccggcttcaccaagtatgaccta
atagattactatattcaggtttccgcatatattttgccctacctcaaagacaggcctcag
agcttacaccggcatccagacggaattgaccaaaaaggtttttaccataaagaccatgat
catcttccggcgtggatggatacggtttccgtattttctaaatcttctgaccgcatgatt
aactacctattgtgccaaaacgaagccggattgctgtatatggccaatctggggtgtatt
gaaatcaacccttggaattcgcgagtaggtaaattagagaaacccgattatgccataatc
gatcttgatccctcagacaccaatacctttgaagaagttatcactgtagcgcaggcggtt
aaagaaattttagatcaggcaggtattcaaggtttttgcaaaacctctggttcgagtggt
ttacacatctacatcccgttggcggcacagtacagttatgccgaagctcgtaatttcacc
aaattgctgtgtatgtatgtggaggaaaaggttcctaagcttagcagtatggcccgtacg
attaaagaccgaaaaggtaaaatttatctggactatctgcaaaacagaaaagggcaaaca
cttgccgccccctattgtgtcagacccaaacccggagcaacggtttctgctcctctagag
tggaaggaagtcaaggcgggactacaaatcaatcagtttaccataaaaacaatgctcgac
cgtctagcagaacagggcgatctatttgctggagttttaggaatgggtattgatatggct
gctgcccttaaaaagttagatacggcataa
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