KEGG   Leishmania panamensis: LPMP_241340
Entry
LPMP_241340       CDS       T06539                                 
Name
(RefSeq) histone deacetylase, putative
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lpan  Leishmania panamensis
Pathway
lpan03082  ATP-dependent chromatin remodeling
lpan03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lpan00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    LPMP_241340
   03083 Polycomb repressive complex
    LPMP_241340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lpan03036]
    LPMP_241340
Enzymes [BR:lpan01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     LPMP_241340
Chromosome and associated proteins [BR:lpan03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     LPMP_241340
   HDAC complexes
    Sin3A-HDAC complex
     LPMP_241340
    BRAF-HDAC complex
     LPMP_241340
    REST complex
     LPMP_241340
    SHIP complex
     LPMP_241340
    MiDAC complex
     LPMP_241340
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     LPMP_241340
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    LPMP_241340
  Chromatin remodeling factors
   NuRD complex
    LPMP_241340
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 22575543
NCBI-ProteinID: XP_010699474
UniProt: A0A088RRN5
LinkDB
Position
24:481754..483055
AA seq 433 aa
MRPSRVRALHALVHSLGLDDAECMTVCHARPATAEEMGTFHRGAYLECLRQAPVICGNPL
DEMSLAFQKEFDVPFASQEGDCPLFPEVWSLVSSQAGASLACAEALLRGDATVAMNWAGG
MHHAAAAHASGFCFVNDIVLCIRRLLRHYQRVLYIDLDVHHGDGVEGAFYGNHRVMTLSL
HQFGNGFFPGTGDYPTRETADSFAINVPLPTRTGDAAYLLSFRTALSSVVQCFDPEAMVV
QCGADTIVGDLIGRLCVTTLAHTQCVANVLSFERPTVLLGGGGYHVFHTARCWAIHTATA
LGRTAAQLPLYIPRTDPYYMDYRQECTPKRPTLHVFLDPDVDDPLPLGDSLAFWRQLCLS
IQWQMRTARLVRQGFSRTVQLCRQRRAALLRQFASQEAGKESGVGVSGPKRPRSAATTDR
SGEEGAEDRVFSG
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgcgaccgtctcgtgtgcgtgcgctgcacgcgcttgttcattccttgggcctcgacgat
gcagagtgtatgacggtgtgccatgctcgtccggcaacggcagaggagatggggacgttt
caccgcggcgcatacttggagtgtctgcggcaggcgccggtcatttgcgggaatccgctg
gacgagatgtccctcgcctttcagaaggaatttgacgtcccgttcgcgtctcaggagggc
gactgtcctctcttcccggaggtatggtcgctggtgtccagccaagctggtgcctcgctt
gcctgtgcagaggccctcttgcgcggcgatgctacagtggcgatgaactgggccggcggc
atgcatcacgccgctgctgcccacgcaagcgggttctgctttgtgaatgacattgtgctg
tgcatccgccggcttctgcggcactaccagcgcgttctctacattgacctggatgtgcat
cacggggacggcgtggagggggccttttatggcaatcaccgcgtgatgacactctcgctt
caccagttcggcaacggctttttccccggcaccggcgactatccaacacgtgagacagct
gacagcttcgctatcaacgtcccactacccacgcggacgggagacgccgcttacctctta
tctttccgcactgcactgtccagcgtggttcagtgtttcgatccggaggcgatggtcgtg
cagtgcggcgccgacaccatagtaggcgacctcattgggcgactttgcgtgactacgttg
gcgcacacgcagtgtgtggccaatgtgctgtcatttgagcgaccgacggtactgcttgga
ggaggcggttaccacgtgttccacacggcccgctgctgggcgatccacaccgccaccgcg
cttggtcgcacagccgcacagctacccttgtacatcccgcgcacggacccctactacatg
gattaccggcaagaatgcacgccaaagcggccgacgctgcacgtatttctcgaccctgac
gttgatgacccactgccgctgggggacagcttggcgttctggcgtcaactgtgtctcagc
atccagtggcagatgcgcactgcccgccttgtgaggcaagggttttctcgcacagtacag
ctttgccggcagagacgggcagcgttgctgcggcagttcgcctcgcaagaggcagggaaa
gaatctggtgtcggtgttagcggtcctaagcgcccccgctcagcagctacaacggaccgc
agtggcgaggagggggcggaggacagagtgttctcggggtga

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