Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12): lp12_0976
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Entry
lp12_0976 CDS
T01726
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpe
Legionella pneumophila subsp. pneumophila ATCC 43290 (serogroup 12)
Pathway
lpe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lp12_0976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpe03400
]
lp12_0976
Enzymes [BR:
lpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lp12_0976
DNA repair and recombination proteins [BR:
lpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
lp12_0976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
DUF1474
Helicase_C_2
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEW51245
LinkDB
All DBs
Position
complement(1055238..1058699)
Genome browser
AA seq
1153 aa
AA seq
DB search
MNTKTLLYQPTKNKQIWGQLYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFF
LNPNQNTQELLFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRL
SPPEFLNQYALMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPMGSG
LPFRIELFDDEIESLREFDPETQRTIEKINQIHLLPAREFPLNEQSQLHFRRAFRESFPG
NPSHCPIYEAISNNQFPSGIEYYLPLFFDKTVTFFDYLPANAKICLIEEIQENAERFWRE
LNERYEQRRHDVSRPILPPDNCFINPTELLTKANHYEQVRLYHKPSEKKGALNFNIAKAP
QLPIDRKNIEPLRQLSEYCSDPTRRYLIVVESAGRREVLLDLLKSSHIIPKTQNSWLDFI
YDESPINITTGPLIYGCELTDKQIVIIVESQLFGEQSTPQRRSTQKSVDPDLIIRDMAEL
RLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAYAGDDKIYVPVTSLHMISRYTGVDS
EHAPLHKLGSEQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGF
PFTETPDQLQAIEQIIKDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP
TTLLAGQHFESFRDRFADFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNN
ISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAK
IQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYI
GDIHNRLIMYKRIANAKTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAEQLGIQK
ISASAQQGKLDFSEKPSIDPGTLISLIQVHAKRYQMEGPQRLRFTLDSTSAEERIFEISS
LLNKLSPHSQTID
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaaacgctactttaccaacccacaaaaaataaacaaatatgggggcaactc
tatggtagcagtctggcacttgctttagctgaatattgccaacaaacacccgggatcaaa
ttacttattacgcaagacaacctatgcgccagtcagttgcaggatgaactacaatttttt
ctaaacccgaaccaaaatacccaggagttattattttttcccgactgggaaaccttgcct
tatgatcaattctctcctcatcaagatattatttcagaaagactctacaccttaagcaga
gttcaacaaattaccaatggaatcatcatttcttcagccagcactttaatgcacaggctt
tctccgccagagtttttaaatcaatacgctttaatgcttaaagaggggcaaaagcttgat
ctgaactcgttcaggaatcagttgcaacaagctggataccattgtgttaataaagtgctt
gaacatggtgaatacgcactacgtggatctattattgacgtatatccgatgggtagtggt
ttacctttccgtatcgagctatttgatgatgaaattgaaagtctcagagaatttgatccg
gaaacacaacgcacaatagaaaaaatcaatcaaatccatttgttacctgctcgtgaattt
ccattaaatgaacaaagccaattacacttccgacgagctttcagagagtcttttcctgga
aatcccagccattgcccaatatacgaagcaattagtaacaatcaatttccatctggcata
gaatattatctgcccttgttttttgataaaaccgttaccttttttgattatctgccagcc
aatgccaaaatttgtttaattgaagaaatccaggagaatgctgagagattctggcgagaa
ttaaatgaacgctatgaacaaaggcgtcatgatgtcagccgccctattttacccccagat
aattgctttattaatcccaccgagttattaactaaagcaaaccattatgaacaagtacgc
ctgtatcacaaaccttccgaaaaaaaaggagccttaaatttcaacattgccaaagctcca
caactacccattgacaggaaaaatattgagccactccgccaattaagtgagtattgttct
gatccaactcgacgctatcttattgttgttgaaagcgcagggcgtcgcgaagtgttactg
gatctgcttaaatcaagccatatcattccaaaaacacagaactcatggttagacttcatt
tacgatgaatcccccatcaatataactactggcccattgatttatggctgtgaattaacc
gacaaacaaattgtgatcatcgttgagtcgcaattatttggtgagcaaagcacacctcaa
cgccgaagcactcaaaaatcagttgaccctgacttaatcatacgagatatggccgaactt
cgattgggcgctcctgttgtacatcttcaatttggagtaggtcgctatcaaggtttgcaa
tacattgactccaatggtacccccagtgagttccttgtccttgcttacgcaggggatgac
aaaatctatgtgccagtcacttctctgcatatgataagccggtatactggtgtggacagt
gaacacgcccctttgcataaactgggttctgaacaatggcaaaaggaaaaaaagaaagcg
gccgagaagattcatgatgttgcaattgaattattggatctctatgctaaaagagaagcc
cagccagggcaccaatacgatttcaatcaatccgaatatataaaattcgccagtggcttc
ccctttacagaaacaccagatcaacttcaagctattgaacaaattattaaggacatgcaa
tcaccaagaccgatggatcgcctaatctgtggtgatgtaggatttggcaaaacagaagtc
gccatgcgtgctgcattcgtagctgtacaaaatggaaaacaagtctgtatccttgctcca
actaccttgcttgcaggacaacattttgagtcatttcgcgatagatttgcagattttcct
gttaatattgaattattatcccgctttcgcagtaataaagagtccgaagcagtccttgcc
gcattgcaatcaggtaaagtagatattgtaattggaacccataaattattccaaaataat
atttctttcaaaaacctgggattactgattattgatgaagaacatcgatttggagtgaaa
caaaaggaacatattaaatcgcttcgaactcatgttgatattttatccatgactgctact
ccaattcccagaacattgaacatggcaatggcaggaatcagagatatttcacttattgca
acaccgcctgccaagcgtttggcaattaaaacattttggcaagaaaaaaatgatctcacc
atacgagaagcgatattgcgtgaaatattaaggggagggcaggtattttacctgcataac
aatgtacaaactatagaaagagtttgccaggatctggaagctttagtgcccgaggcaaaa
attcaaagcgcacatgggcaaatgcgagaaaggcaattagagcgcatcatgtctgatttt
tatcatcaccgatttaatgtcctggtttgcacaaccatcattgaaacagggatcgatatt
ccaaccgccaatacgattattatcgatcgtgccgataaatttggattagcccagctgcat
caattacgtggtcgtgttggacgctctcatcatcaagcctacgcttacttattaactccc
aatgaaaaactgttaacgccagatgcagtgaaacgtctcgaagccattgtgtctttagaa
gatttgggagcaggattcaccttggcaacacacgatctggaaattcgtggagcaggtgaa
ctccttggtgaagaacaaagtggtaatatgcatgccataggatttaatttatttatggaa
atgcttgaccgtgccgttaacgatttaaaggcaggcaaaactcctgaattgtcagcaccc
atgcatcaaggacctgaaattgacttgagaattagcgcgattatccccgaagattacata
ggtgatatacacaatagactcatcatgtataaaagaattgctaatgcaaaaactacccaa
caacttagagaactacaaatagaactgatagaccggtttggtttactcccgcaaccagtc
aaacatctgtttttgattactgaattaaagttaaaagcggaacagctcggcattcaaaaa
atcagtgccagtgctcaacaaggtaaattggattttagtgaaaaaccatcgattgaccct
ggaaccctgattagcttaatacaagtacatgccaaacgctatcaaatggaaggaccgcaa
cgtctgcgctttactttagacagcacgtcagcagaggaacgaatatttgaaatcagttct
ttattaaataaactgtctcctcattcccaaacgattgactga
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