Lolium perenne (perennial ryegrass): 127336309
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Entry
127336309 CDS
T08650
Name
(RefSeq) putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127336309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lper03400
]
127336309
Enzymes [BR:
lper01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127336309
DNA repair and recombination proteins [BR:
lper03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
127336309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
127336309
NCBI-ProteinID:
XP_051219067
LinkDB
All DBs
Position
2:303375311..303384952
Genome browser
AA seq
1238 aa
AA seq
DB search
MAARVRFGLLVSMLQAMSQDRTATKKRGRLRAFLDIVYGESARDDYFSALRLIIPALDRE
RTSYGLKEAALAAVLVDALGIAKDSPDALRLINWRRGGGGRNAGNFALVAAEVLQRRQGM
TSGGLTIKEVNDALDRLSASDNRSEKALILSSLIKKTTALEMKWLLMIILKDLKVGISEK
GVFHEFHPDAEDLFNVTCDLKLVCEKLNDRSQRHKRQDIEVGKAVRPQLALRVSNASSAW
KKLHGKPVVAECKFDGERIQIHKNGDDIHFFSRTFFDHSEYAPAMSKFIKENILAERCIL
DGELLVWDTALNRFDEFGSNQEIAKAESEGLKTDRQLCYIAFDILYAGEGSFIHLSLTER
HEMLRKFVKPLKGRVEILVPAGGLNIHRTPDEPCWSIFAPNIEDIEKFFKETVENRDEGI
VLKDLDSKWEPGDRNGKWLKLKPDYINAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAVP
SDDNSYPKRFLSFCRVGTGLSDEELATLVVKLKPHFRKNEYPKKPPRFYEVTNNSKERPD
VWIESPDKSVIISITSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQSFAEIVH
SSNGTMHKAEGDKSLKNDNLKNSKTNKRREKKNVSIIPAHLMKTDISGLKGESLIFANTM
FYFVNTPPSYNLDYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYKAAMRHGRIIHHS
WILDCSKQKCLLRLQPKYILFLADFARHKFPEEIDSYADFYYWDIDVADLKQIFSNIDKV
PVDPSMVHRYKKKYYADERFCFFQGCCIYFYHAPLVNEDYNVISDLALKRVKQDLTMHGG
QFCSSLAPATHLVIVSVLQVYNFDIVYKSFPPAERRYLHDKRLHVVTNKWLEDSVDKQMK
LPETAYNLKPDTLEEVQIERSEENIQPSNDKHAEDVEVEPSHAKNVRKRGRPASSSSRTV
RAAPKPVRRTKARRGNKHAKIDDIESEESGPGETGQDDLKSNTDDISKMEEDSSDKDHRP
PRAAPRPVRRTNARRGNRRAKVDYHESEESEPGEGQEDQNMDTKEDNLDKDLGPPPGAQF
IALDEEKPKVVKLTAAEETTSSPKYESKGTSERTNAVEGTSMRGEKIEQMVDPLHAMLLD
MLPSLRNIQGEHASSAPPAKVEIDPPQVGSSASNYRAPMPETGSSASNFTAPTPPTPQTA
SSSHGTSIPAPAPAPDGAAPKKKKVSYKDMASELLKDW
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagggtgcggttcgggctcctggtgtcgatgctccaggccatgtcgcaggac
cgcacggcgaccaagaagcggggccgcctccgcgcgttcctcgacatcgtctacggggag
agcgcaagggacgactacttcagcgcgctccgcctcatcatccccgccctcgaccgcgag
cgcacctcctacgggctcaaggaggcagccctcgccgccgtcctcgtcgacgcgctcggg
atcgccaaggactcccccgacgctctccgcctcatcaactggcgccgtgggggaggcggc
cgcaacgccggcaacttcgccctcgtcgccgccgaggtactgcagcggaggcaaggaatg
acttctggtgggttgaccataaaggaggttaacgatgcactcgatcgtctttcagcaagt
gacaataggtctgagaaggctttgattctttcaagtctgatcaagaaaaccactgccctt
gaaatgaagtggcttctaatgattattcttaaagatttaaaagtggggatcagtgagaag
ggtgtattccatgagtttcaccctgatgccgaagacctgttcaatgttacttgtgactta
aagttggtctgtgaaaagctcaatgatcggagtcaaaggcacaaacgtcaggatatagaa
gtcggaaaggccgtgaggcctcaactagctctgagagtcagtaacgcttcatctgcttgg
aagaagcttcatggcaaaccagtggttgctgagtgcaaatttgatggcgagcgtatccaa
attcacaaaaatggggacgatattcatttcttctcacggaccttttttgatcattctgaa
tatgcacctgcgatgtccaaatttattaaggagaatatcctggctgaaaggtgtattttg
gatggagagctgcttgtgtgggacactgcgcttaatcggtttgacgaatttggctcaaac
caggaaatagcaaaggctgaaagtgaggggctgaagactgatcgacagttgtgctatatt
gcttttgacattctttatgctggagagggtagttttatccacctaagtttgacagagcgg
catgaaatgttgcggaagtttgttaaacccttaaagggtcgtgttgagattttggtccca
gcaggtggtctgaacatccatcgtaccccagatgaaccatgctggtccatttttgctccc
aatattgaagatattgagaaattcttcaaggagactgttgaaaacagagatgagggaatt
gtactaaaggaccttgactccaaatgggaacctggtgatcgaaatggaaagtggcttaaa
ttaaagcctgattatataaatgctggtgctgatctggatgttattattataggtggatat
tatggatcagggcgtcgagggggagaggttgcacagtttttagttggtcttgcagtgcct
tcagatgataatagttaccccaaaagattcctttctttttgtcgagtcggtactggtctc
tccgatgaagaacttgccactctagtcgtgaaactgaaaccccacttcagaaaaaatgag
taccccaaaaaaccacccagattttatgaagtaacaaacaattcgaaggagcggccagat
gtttggatagaaagccctgataagtcagtcataatatctataacaagtgatatccgaaca
atcaaatctgaggtatttgctgccccatactgcttgaggttccctcgcattcaacgagtg
agatatgataagccatggcacgagtgccttgatgtgcagtcatttgcggagattgtgcat
tcaagtaatgggacaatgcacaaggcagaaggtgataagagtctgaaaaatgacaactta
aagaactcaaaaacaaacaaaaggagagagaagaagaatgtatcaatcatccctgcacat
cttatgaagactgatatatcaggcttaaagggagaatccctgatatttgcaaacacgatg
ttctattttgtcaacacccctccatcatataacctcgactatttccataaactggttgtg
gagaacggaggatctttctcaatgaatcttaatgactcagttactcactgtatagcagcg
gagaagaaaggtatcaaatataaggcagccatgcgccacggaaggatcatccatcattca
tggatcttggactgttccaagcaaaaatgtcttcttcgtttgcaacccaagtatatcctc
tttcttgcagattttgccagacacaaatttcctgaagagattgactcgtacgctgacttt
tactactgggacatcgacgttgctgacctcaagcagattttcagcaacatcgacaaagtt
cctgtcgatccaagcatggtacatcggtacaaaaagaagtactatgcagatgaaagattc
tgcttcttccagggttgctgcatttacttctatcatgcacctttagttaatgaggactac
aatgtaatatctgatcttgcactgaagagggtgaagcaggaccttaccatgcatggtggt
cagttttgcagcagccttgctcctgcaacccatttggttatagtttcagttcttcaggtg
tacaattttgacatagtgtacaagagcttccctccagctgagagacgttacctacatgac
aaaagattgcatgtagtcactaataagtggttagaagattcagtggataaacaaatgaag
cttcctgaaacagcctacaaccttaaaccagatacattagaagaagtacaaatcgaaagg
agtgaggagaatatccagccctctaatgacaagcacgcggaagacgtggaggttgaacca
tctcatgctaaaaatgtaaggaaaaggggcaggccagccagcagtagttcaagaactgta
cgggctgctcctaagccagtccgaagaacaaaggctagaagaggaaataagcatgcaaag
atagatgatattgaatctgaagaaagtggccctggtgaaacaggccaggatgatctaaag
tcaaacacagatgacatctctaagatggaagaagatagcagcgacaaagatcatagacca
cctcgagctgctcctagaccagttcgaagaacaaatgctagaagaggaaatcggcgtgcg
aaagtagattatcatgaatctgaagaaagtgaacctggtgaaggtcaagaagatcaaaac
atggacacaaaggaagataacctggataaagacctaggaccacctccaggtgcccagttc
atcgcattggatgaggaaaagcccaaagttgtcaaattgactgccgcggaggagacaaca
agcagtccaaaatacgaaagcaagggaacttccgaaagaacaaacgctgttgaaggaaca
agcatgagaggagagaagatagaacagatggttgatcctttgcacgcaatgcttcttgac
atgttaccatcacttaggaacatacagggagaacatgcgagcagcgctccaccagccaaa
gttgagatcgatccaccgcaggtgggaagttcggcatcgaattacagggcaccaatgcct
gagacaggaagttctgcatcgaacttcacggctccaacacctccaacaccgcagacagca
agttcctcacatggcaccagcattccagctccagctccagctccagatggtgctgctcca
aagaagaaaaaggtgagctacaaagatatggctagtgagcttcttaaagattggtga
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