Lolium perenne (perennial ryegrass): 127344959
Help
Entry
127344959 CDS
T08650
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127344959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lper03041
]
127344959
Enzymes [BR:
lper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127344959
Spliceosome [BR:
lper03041
]
Complex A
U2 snRNP components
U2 related factors
127344959
Complex B
127344959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
127344959
NCBI-ProteinID:
XP_051227302
LinkDB
All DBs
Position
3:241840111..241844827
Genome browser
AA seq
1079 aa
AA seq
DB search
MSSSEDERGTASKHHHRDKEKNREHSSSRRHRESRSSSRHHRDDRDGERDRDRDRKHRDK
ERDREERKARERAEKEREKEEKKEREREREREREREEMEMEREREREREKEKEKERERAR
RREERDREKEKSRRRDAVDDEENGDHDRKHRRRSSHHHHHRRVAEPEATPPTREEEEDGE
EAQRRRQKKKEEDMEAEQQRLDDEMERRRRRVKEWQEKKRLEQQLQQQDDGASGVATSME
TDGGSKSGKKWTLDGEESDEEDAKKSDEEDSKKSEENAGTDAGAMDVDLPSRSIHGNSGP
AMEEDEIDPLDAFMNSMVLPEVAKLESAPTAMASVPAANAGDKNDKSVKSATSNGDKKRP
IKAMGRIMQGDDSDSDYDDADSDEAGSDDEDDTEFIKRVKKTKAEKLVIVDHSKIDYQPF
RKNFYIEVKDITRMPADEAAAYRKLLEIKVHGKDVPKPIKTWIQSGLTSKLLDTIKKLGF
EKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMA
PTRELVVQIYSDIKKFSKALGINCVPIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCT
SSGKITNLRRVTFLVLDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILAR
KVLTKPIEIQMGGRSVVNKDITQLVEVRPESERFFRLLELLGEWIAKGKILVFVHSQDKC
DSLLKELFQHGYPCLSLHGGKDQNDRESTLADFKSNVCSLLIATSVAARGLDVKDLELVV
NYDVTNHYEDYVHRVGRTGRAGRKGCAVTFISEEEERYAPDLVKALELSEQAVPQDLKAL
ADRFMSKVKQGTEQAHGTGYGGSGFKFNEEEEEARKSAKKAQAREYGYEDEKSDSDSDEE
GGVRKKGGDVAAQAIAAAQAAATLAAARQQVPATVANPLLPLPVAPNQQNNDATLRALQA
AFNVQQSLARIQAHAVPEHYEAELEINDFPQNARWKITHKETLGPIQEWTGAAITTRGTF
IPQGKVVGANERKLYLFIEGPNESSVKKAKTELKRVLEDCANHALNLPGSAQTGKYSVI
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccagcgaagacgagcgcgggaccgcctccaagcaccaccaccgggacaaggag
aagaaccgtgagcactcctcctcccgccgccaccgtgagagccgctcctcctctcgccac
caccgcgatgacagggacggcgagcgggaccgagatcgcgaccgcaagcacagggacaag
gagagggatcgcgaggagcggaaggcgagggagcgggcggagaaggagcgcgagaaggag
gagaagaaggaaagggagagggagagggagagggagagggagagggaggagatggaaatg
gaaagggaaagggagagggagagggagaaggagaaggagaaggagagagagagggcgcgg
cgtcgagaggaacgcgacagggagaaggagaagtccaggaggcgggatgcggttgacgac
gaggagaacggggaccatgaccgcaagcatcgccgccggtcctcgcaccaccatcaccac
cgccgtgttgcggagcctgaggcgacgccaccgactagggaggaggaggaggatggcgag
gaggcgcagaggcggcggcagaagaagaaggaggaagacatggaggctgaacagcagcgg
ctcgacgacgagatggagcgtcgtcgccgccgcgtaaaggagtggcaggagaagaagcgc
ctcgagcagcagctgcagcagcaggatgatggtgccagtggtgttgccacctccatggag
actgacggtggaagcaagtctgggaagaagtggaccttggatggcgaggagtcggatgag
gaggatgccaagaagtcggatgaggaggactccaagaagtcggaggagaatgctggcact
gacgctggtgccatggatgttgacttgccttccaggagtattcatgggaatagcggacct
gctatggaggaggatgagattgatccccttgatgcgtttatgaactccatggtgttaccg
gaggttgcaaagcttgagagtgccccaacagcaatggcaagcgtccctgctgccaatgca
ggtgacaagaatgacaagagtgtgaagtctgccacgagtaacggggataagaaaagacca
atcaaggcgatgggaagaattatgcaaggggatgactcagactcagattatgatgacgct
gatagtgatgaggctggttcggatgatgaggatgacacggagttcataaaacgtgtcaag
aagacgaaggcagagaagttggttattgttgaccattccaagattgattaccagccattc
cgtaagaatttctatattgaggtgaaggatatcacaaggatgccagccgatgaagcggct
gcctaccggaagctgttggaaatcaaggtgcacgggaaagatgtccccaagccaatcaag
acgtggatacagagtggtctgacaagtaagctacttgacaccatcaagaagcttggtttc
gagaaaccgatgcctatacaggcacaggcgttgccaatcataatgagtggacgcgattgt
atcggtgttgcaaagactggatctggtaagactctagcgtttgtcttgccgatgctgagg
catgtcaaagatcaaccacctgttgtgcctggggatggccctattggtctcattatggct
cctacaagagagctcgtggtgcagatatattcagacataaaaaagttctctaaggcactt
ggcatcaactgtgttcctatatacggaggttctggggttgcccagcagatcagtgaactg
aagcggggtgctgaaattgttgtttgtactccaggcaggatgattgatatcctttgcact
agcagtggaaagattactaaccttcgaagagttacattcttagtgctggatgaagctgat
aggatgtttgatatgggttttgagcctcaaattactcgaatagttcagaacacccgtcca
gataggcagactgtccttttctctgctacttttccacggcaggttgagatactcgcacgt
aaggtgctgacaaagcccattgagattcagatgggtgggaggagtgtcgtgaacaaagat
atcacacaactggttgaggtgcgaccagaaagtgagaggttctttaggctgttggagttg
cttggggagtggattgcgaagggaaaaattcttgtgtttgtacactcacaagataaatgt
gattctctacttaaagagctgttccagcatgggtacccatgtttatctctacatggtgga
aaggatcaaaacgatcgtgaatcaactcttgcggatttcaagagtaatgtatgcagtctg
ctgattgctactagtgttgctgcaaggggtttagatgtgaaagatcttgagctggttgtc
aattatgatgtcactaatcattatgaggactatgttcatcgtgttgggcgaacgggtcgg
gctggtaggaagggctgtgcggtgacttttatatctgaggaagaggaacgctacgcacca
gaccttgtcaaggctttggagctatctgaacaggctgttccacaagacctgaaagcctta
gcggatcgatttatgtcaaaggttaagcagggaactgagcaggcccatggaacaggctat
ggtggaagtggtttcaagttcaacgaagaagaggaggaagcacggaaatccgcgaaaaag
gctcaggcacgggaatatggatatgaggacgaaaagtcagattcagattctgatgaggaa
ggaggtgtacgtaaaaaaggaggtgacgttgcagcacaggctattgctgctgctcaagct
gcggctactttggctgccgccaggcagcaagtaccagccacagtggcaaaccccttgctt
cctctgccggttgcacctaaccaacaaaacaatgatgctacattacgtgcacttcaggct
gcatttaacgtgcagcaaagtctggcaaggatacaggctcatgcagttccagaacactat
gaagctgagcttgagattaatgatttcccacaaaatgctcgctggaagatcacgcacaaa
gagacattaggtcccattcaggaatggactggagctgcgattactacaaggggtaccttt
attcctcaaggcaaagttgttggtgctaacgagcgcaagctgtacctgttcatcgaaggc
cccaatgagtcttccgtcaagaaggcaaaaacagaactgaagcgcgtccttgaggattgt
gccaaccatgcactgaatcttcctggttctgctcaaaccggaaagtactctgttatttga
DBGET
integrated database retrieval system
