Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1): LPV_1092
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Entry
LPV_1092 CDS
T02174
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lph
Legionella pneumophila subsp. pneumophila HL06041035 (serogroup 1)
Pathway
lph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPV_1092 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lph03400
]
LPV_1092 (mfd)
Enzymes [BR:
lph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPV_1092 (mfd)
DNA repair and recombination proteins [BR:
lph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPV_1092 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
DUF1474
Helicase_C_2
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CCD08278
LinkDB
All DBs
Position
complement(1095288..1098749)
Genome browser
AA seq
1153 aa
AA seq
DB search
MNTKTLLYQPTKNKQIWGQLYGSSLALALAEYCQQTPGIKLLITQDNLCASQLKDELQFF
LNPNQNTQELLFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRL
SPPEFLNQYALMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPMGSG
LPFRIELFDDEIESLREFDPETQRTIEKINQIHLLPAREFPLNEQSQLHFRRAFRESFPG
NPSHCPIYEAISNSQFPSGIEYYLPLFFDKTVTFFDYLPANAKICLIEEIQENAERFWRE
LNERYEQRRHDVSRPILTPDNCFINPTELLTKANNYEQVRLYHKPSEKKGALNFNIAKAP
QLPIDRKNIEPLRQLSEYCSDPTRRYLIVVESAGRREVLLDLLKSSHIIPRTQNSWLDFI
YDESPINITTGPLIYGCELTDKQIVIIVESQLFGEQSTPQRRSTQKSVDPDLIIRDMAEL
RLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAYAGDDKIYVPVTSLHMISRYTGVDS
EHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGF
PFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP
TTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNN
ISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAK
IQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYI
GDIHNRLIMYKRIANAKTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAAQLGIQK
ISASAQQGKLDFSEKPSIDPGTLISLIQVHAKRYQMEGPQRLRFTLDSTLAEERIFEISS
LLNKLSPHSQTID
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaaacgctactttaccaacccacaaaaaataaacagatatgggggcaactc
tatggtagcagtctggcacttgctttagctgaatattgccaacaaacacccgggatcaaa
ttacttattacgcaagacaacctatgcgccagtcagttgaaggatgaactacaatttttt
ctaaacccgaaccaaaatacccaggagttattattttttcccgactgggaaaccttgcct
tatgatcaattctctcctcatcaagatattatttcagaaagactctacaccttaagcaga
gttcaacaaattaccaatggaatcattatttcttcagctagcactttaatgcacagactt
tctccgccagagtttttaaatcaatacgctttaatgcttaaagaggggcaaaagcttgat
ctgaactcgttcaggaatcagttgcaacaagcaggataccattgtgttaataaagtgctt
gaacatggtgaatacgcactacgtggatctattattgacgtgtatccgatgggtagtggt
ttacctttccgtatcgagctatttgatgatgaaattgaaagtctcagagaatttgatccg
gaaacacaacgcacaatagaaaaaatcaatcaaatccatttgttacctgctcgtgaattt
ccattaaatgaacaaagccaattacacttccgacgagctttcagagagtcttttcctgga
aatcccagccattgcccaatatacgaagcaattagtaacagtcaatttccatctggcata
gaatattatctgcccttgttttttgataaaaccgttaccttttttgattatctgccagcc
aatgccaaaatttgtttaattgaagaaatccaagagaatgctgagagattctggcgagaa
ttaaatgaacgctatgaacaacggcgtcatgatgtcagtcgccctattttaaccccagat
aactgctttattaatcccaccgaattattaactaaagctaacaattatgaacaagtacgc
ctgtatcataagccttccgaaaaaaaaggagccttaaatttcaatattgccaaagctcca
caactccccattgacaggaaaaatattgagccactccgccaattaagtgagtattgttct
gatccaacgcgacgctatcttattgttgttgaaagcgctgggcgtcgcgaagtattactg
gatctgcttaaatcaagccatatcattccaagaacacaaaactcgtggttggacttcatt
tacgatgaatcccccatcaatataactactggcccattgatttatggctgtgaattaacc
gacaaacaaattgtgatcatcgttgagtcgcaattatttggtgaacaaagcacacctcaa
cgccgaagcactcaaaaatcagttgatcccgacttaatcatacgagatatggccgaactt
cgattaggcgctcctgttgtacatcttcaatttggagtaggtcgctatcaaggtttgcaa
tacatcgactccaatggtacccccagtgagttcctcgtccttgcttatgcaggggatgac
aaaatctatgtcccagtcacttctctgcatatgataagccggtatactggtgtggacagc
gaacacgcccctttgcataaactgggttctgatcaatggcaaaaggaaaaaaagaaagcg
gccgagaagattcatgatgttgcaattgagttattggatctctatgctaaaagagaagcc
cagccagggcaccaatacgatttcaatcaatccgaatatataaaattcgccagtggcttc
ccctttacagaaacaccagatcaacttcaggctattgaacaaattattagggacatgcaa
tcaccaagaccgatggatcgcctaatctgtggtgatgtaggatttggcaaaacagaagtc
gccatgcgtgctgcattcgtagcagtacaaaatggaaaacaagtctgtatccttgctcca
actaccttgcttgcaggacaacattttgagtcatttcgcgatagatttgcagagtttcct
gttaatattgaattattatcccgctttcgcagtaataaagagtccgaagcagtccttgcc
gcattgcaatcaggtaaagtagatattgtgattggaacccataaattattccaaaataat
atttctttcaaaaacctgggattactgattattgatgaagaacatcgatttggagtgaaa
caaaaggaacatattaaatcgcttcgtactcatgttgatattttatccatgactgctact
ccaattcccagaaccttgaacatggcaatggcgggaatcagagatatttcacttattgca
acaccgcccgccaagcgtttggctattaaaacattttggcaagaaaaaaatgatctcacc
atacgagaagcgatattgcgtgaaatattaaggggagggcaagtattttacctgcacaat
aatgtacaaactatagaaagagtttgccaggatctggaagctttagtgcccgaagcaaaa
attcaaagcgcacatgggcaaatgcgagaaagacaattagagcgcatcatgtctgatttt
tatcatcaccgatttaatgtcctggtttgcacaaccatcattgaaacagggatcgatatt
ccaacggccaataccattattatcgatcgtgccgataaatttggattagcccagctgcat
caattacgtggtcgtgttggacgctctcatcatcaagcctacgcttacttattaactccc
aatgaaaaactgttaacgccagatgcagtgaaacgtctcgaagccattgtgtctttagaa
gatttgggagcagggttcaccttggcaacacacgatctggaaattcgtggagcaggtgaa
ctccttggtgaagaacaaagtggtaatatgcatgccataggatttaatttatttatggaa
atgcttgaccgtgccgttaacgatttaaaggcaggtaaaactcctgaattgtcagcacca
atgcatcaaggacctgaaattgacttgagaattagcgcgattatccccgaagattacata
ggtgatatacacaatagactcatcatgtataaaagaattgctaatgcaaaaactacccaa
caacttagagaactacaaatagaactgatagaccggtttggtttactcccacaaccagtc
aaacatctgtttttgattactgaattaaagttaaaagcagcacagctcggtattcaaaaa
atcagtgccagtgctcaacaaggtaaattggattttagtgaaaaaccatcgattgaccct
ggaacactgattagcttaatacaagtacatgccaaacgctatcaaatggaaggaccgcag
cgtctgcgttttactctagacagcacgttagcagaggaacgaatatttgaaatcagttct
ttattaaataaactgtctcctcattcccaaacgattgactga
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integrated database retrieval system
