Lytechinus pictus (painted urchin): 129277908
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Entry
129277908 CDS
T09066
Name
(RefSeq) general transcription factor IIH subunit 4-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03022
Basal transcription factors
lpic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129277908
09124 Replication and repair
03420 Nucleotide excision repair
129277908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129277908
03400 DNA repair and recombination proteins [BR:
lpic03400
]
129277908
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129277908
DNA repair and recombination proteins [BR:
lpic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129277908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
STN1_2
Motif
Other DBs
NCBI-GeneID:
129277908
NCBI-ProteinID:
XP_054770065
LinkDB
All DBs
Position
15:28480614..28495983
Genome browser
AA seq
466 aa
AA seq
DB search
MASSMGHAIDNSRKLDCKDLHGYLRTLQGSVLDRLYNHPATCLAVFRELPVLGKHCIMRV
LFIDTPIPQAAVTSWIQSNQQEQLHVALKTLTDLRLFKDQSLPGGLPGWVLNVTFRTNLK
TALIGGGKPWAISGRGGKDKKVKDTAALDKYASERWECVLHFLVGSSKAVDTLSRDIATV
LTHSGLMKMGESGGKPVITPSGFQFLLLDTPSQVWFFMLQYLETAQARGLDIVDALSFLF
QLSFSTLGKDYSSEGMTEQQLHFLQHLRELGLVFQRKRKSMRYYPTRLAINLASGVSSMV
KDDHKDGFIVVETNYRIYAYTESDLQVEILGLFCSMLYRFPNLSVAALTRESVQLAISNG
ITAEQILRFLRTHAHPNMRQKMPIIPPTISDQVRLWELERDRLSFTQGIIYNEFLSLHDF
EVLRDYAKDLGVLIWESVARRIMIVTPSGHDSVKKYWKRLKKGQSS
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttccatgggccatgcaattgacaactctaggaaacttgactgcaaagatctc
catggttatcttcggactcttcaaggatctgttttagatagactctacaatcatcctgca
acatgtctagctgtatttcgtgagcttcctgtgctgggcaagcattgtatcatgagggtt
ttgttcattgatactcctattccacaagcagcagttacatcatggatacaaagcaaccaa
caggaacagctgcacgtagcattgaaaaccctgactgatcttcgtctgttcaaggatcag
tcacttcctggtggtcttcctggatgggttctcaatgtcaccttcaggactaatctcaag
actgctcttattggaggaggaaagccatgggctatcagtggaagaggtggaaaagacaag
aaggtcaaagacactgcggctcttgacaagtacgcttcagaaagatgggagtgtgtgctt
catttcttggtcggttcatctaaggctgttgatacattgagcagagatattgcaacagtg
ttgacacattctggtcttatgaagatgggtgagtccggaggaaagccagtgatcaccccc
tcgggatttcagtttctgcttctggacaccccgtcgcaggtttggttcttcatgctacag
tatctagagaccgctcaggctagagggctagacattgttgacgctctctctttcctcttc
cagctcagcttctcaacattaggaaaggattattcatcggagggcatgactgagcaacag
cttcatttcttacagcatctccgagagctaggcttagtattccaaagaaagaggaagtcg
atgcgctactatccaacaaggcttgccatcaacttggcttcaggtgtatcaagtatggtc
aaagatgatcacaaggatggcttcatcgtcgtggaaaccaactaccgtatttatgcctac
acggaatcagatctacaggttgaaatattaggactgttttgctctatgctatacaggttt
ccaaatctctctgtggctgctctgacaagggaaagcgtacagctagccatatccaatgga
atcacagccgaacagattctacgtttcttgaggacgcatgcacacccaaacatgcgacaa
aagatgcccattatacctcctactattagtgatcaggtcaggttatgggaactggagaga
gatagactcagctttacacagggaatcatatacaatgagttcttatctcttcatgacttt
gaggtgctgcgggactatgcaaaggatctcggtgttcttatatgggagagtgtcgcaagg
cgcatcatgatcgtcactccatcagggcatgacagtgtgaagaagtactggaagcgattg
aaaaaaggacaatcttcatag
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