KEGG   Limulus polyphemus (Atlantic horseshoe crab): 106460981
Entry
106460981         CDS       T08968                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lpol  Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03030  DNA replication
lpol03410  Base excision repair
lpol03420  Nucleotide excision repair
lpol03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lpol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106460981
   03410 Base excision repair
    106460981
   03420 Nucleotide excision repair
    106460981
   03430 Mismatch repair
    106460981
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lpol03032]
    106460981
   03400 DNA repair and recombination proteins [BR:lpol03400]
    106460981
Enzymes [BR:lpol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106460981
    6.5.1.6  DNA ligase (ATP or NAD+)
     106460981
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106460981
DNA replication proteins [BR:lpol03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    106460981
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     106460981
DNA repair and recombination proteins [BR:lpol03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106460981
   NER (nucleotide excision repair)
    Other NER factors
     106460981
   MMR (mismatch excision repair)
    Other MMR factors
     106460981
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 106460981
NCBI-ProteinID: XP_013776199
EnsemblRapid: LOC106460981
LinkDB
Position
Unknown
AA seq 951 aa
MSQKSILNFFKSEPQQSCNNDEKTKGQSKGKAPKKDSVKKKTRSSSPAKIENDSMDKGEA
ENSTKEQNDSIEFPERESPVKSSTRKRLNRLIDSEDEEEISDKSPRKSRYSCTENEEKSS
SEDKTRIDNSAEVKPDKKTKAHSKENLPPSTSGDQKSPPTTQSTETIPKRRTARKHMKRK
VPAEHTELDEMAVGQKKLKKEEEVNAEEKPINSVSSDEQCSKEESDSENKVKKKEEKTEK
QTDCNENEEESKGSIHSFFAPKKAKTKTVEHAEKESNNVEEATNKSEALKPSSSEKNSYN
PAKNKYHPIEDCCWKRGEKVPYLALARTLEEIESVSARLKMIEILANFFRSVIVMSPDDL
LCAVYLCLNKLAPDYEGIELGVGETVLMKAVAQATGRTLEKIKNDVSNKGDLGIVAETSR
SNQRIMFAPPKLTLAGVFSKLKEIAQMTGNAAMTKKMDKIQGLFVACRHSEARYLIRSLG
GKLRIGLAEQSVLSALAQAVVLTPPAQSYPPEVIDLSKNLSAENLKKKLEEGTLILKTVY
CECPNYNMIIPVILKEGLEALPDRCRLTPGVPLKPMLAHPTKGIEEVLKRFENAKFTCEY
KYDGERAQIHLLEGGEVHIFSRNQENNTSKYPDIISRIPKVLKPSTKSFILDSEAVAWDQ
ENKQILPFQVLSTRKRKDASENEIKVQVCIFAFDLLYLNGESLVKKPLRYRQEKLREAVE
EIEGQFMFARSEAVITTEEVQEILEESIKGNCEGLMVKTLDEEATYEIAKRSHNWLKLKK
DYLEGVGDSLDLVVIGAYHGKGKRTGTYGGYLLACYDAENEEFQSICKIGTGFKDEELET
HANFLKQHVIDKPKSYYRYDGSLQVEVWFEPVQVWEVRCADLSVSPVHKAAIGIVDPEKG
ISLRFPRFLKIRDDKNPEDATSASQVAEMYRNQDQVKNSKSHEVKDDEEFY
NT seq 2856 nt   +upstreamnt  +downstreamnt
atgtcgcaaaagtcgatattaaacttctttaaatccgaacctcagcagagctgtaacaat
gatgaaaagacaaaaggacaaagcaaaggaaaagcaccaaagaaagattccgtgaaaaag
aagacgagaagcagttccccagctaagatagagaatgattcaatggataaaggtgaagca
gaaaattctacaaaagaacagaatgactcaatagaatttcctgaacgtgaatctcctgta
aaaagctctactagaaaaaggctcaatcggctcattgacagtgaagacgaggaagaaata
agtgacaaaagtcccagaaaatccagatattcttgcactgaaaacgaggaaaaatcttcc
agtgaagataaaacaagaattgataattcagcggaagttaaaccagacaaaaaaactaaa
gcacattctaaagaaaatctaccaccatctacatctggtgatcagaaatctccacccaca
actcagtcaactgagacaattcctaaacggagaacagctcggaaacacatgaaaaggaaa
gtaccagctgaacataccgagttagatgaaatggcagtaggccagaagaagctaaagaaa
gaagaggaagtgaatgcagaagaaaaaccaatcaactctgttagttcagatgaacagtgc
tctaaagaagaaagtgatagtgaaaataaggttaagaaaaaggaggaaaaaactgaaaaa
caaacagactgcaatgaaaatgaagaagaaagcaaaggctctattcattcattctttgct
ccaaaaaaagctaagactaaaacagtagaacatgcagaaaaagaatcgaataatgtggaa
gaagcaacaaacaaatcagaagcattgaaaccttccagtagtgaaaaaaactcttataac
cctgctaaaaataaataccatcctatagaagactgttgttggaagagaggtgaaaaggta
ccgtatctggcactggctaggactttggaagaaatagaaagtgttagtgcaaggttaaaa
atgatagaaattttggccaacttcttccgatctgtgatagtcatgtcgcccgatgattta
ctgtgtgctgtgtacctgtgtttaaacaagttggctccagattatgaaggtatagaactt
ggtgttggagaaacagtactgatgaaagcagtagcccaagcaacaggcagaacactggaa
aagattaaaaatgatgtatcaaataaaggggatttgggaattgtagcagagacaagtcgc
agcaaccaaagaattatgtttgcaccaccaaagttaactcttgctggagttttttcaaaa
cttaaagaaattgctcaaatgacagggaatgctgcaatgaccaaaaaaatggacaaaatt
caaggactatttgttgcctgtcgtcattcagaagccagatatctcatcagatctcttggt
ggaaaattgagaataggcttggctgagcagtctgtactatctgcattagctcaggctgtt
gtccttactcctccagcacagagttacccacctgaggttattgatttgtcaaagaacttg
agtgctgaaaaccttaagaaaaagcttgaagaaggcaccctaatattgaaaactgtttat
tgtgaatgtccaaactacaacatgattatcccagttattctcaaagaaggattagaagca
ctgcctgaccgttgtcgtttaacacctggagttcccctgaaacccatgctagctcatccg
acaaagggaatagaagaagtgctgaagcgttttgaaaatgccaagttcacttgtgaatac
aagtacgatggagagagagcccagatccatctcttggaaggtggtgaggttcatatcttt
agcagaaatcaagaaaacaacacatctaaatatccagatataatctctagaatccccaaa
gtcttaaaaccttccaccaaatccttcatcctggattctgaagctgttgcctgggaccaa
gaaaataaacaaattttaccattccaggtattgagcacgaggaagagaaaggatgccagt
gagaatgaaataaaagtccaagtttgtatctttgctttcgacctgctgtatcttaatggt
gaatctttagttaaaaagccattaagatatagacaagagaaactaagagaggctgtagaa
gaaattgaaggacagtttatgtttgctcgttcagaagctgtcattactaccgaggaagtg
caggagattttagaagaatcaattaaaggaaattgtgaagggttgatggtaaaaacactg
gatgaagaagctacttatgaaattgctaaacgttcacacaactggttgaagctgaagaag
gattacctggaaggtgttggtgattctcttgacctagtggtaattggagcataccatggt
aagggtaaacgaacaggaacttatggaggttatctattggcctgttatgatgcagaaaat
gaagagtttcagagtatatgtaaaattggtacaggcttcaaggatgaagagttggagacc
catgccaacttcctgaagcagcatgtcattgataaaccaaagtcctactacaggtacgat
ggaagtcttcaggtggaggtatggttcgaaccagttcaggtgtgggaagtaagatgtgca
gatttgtcagtatctcctgttcacaaggcagccattggaatcgttgatcccgagaaggga
atatccctcaggtttcccaggtttctgaagatacgagatgacaaaaaccctgaagatgca
acttctgcttctcaggttgcagaaatgtacaggaaccaagatcaagttaagaactctaag
tcccatgaagtaaaagatgatgaagaattttattag

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