Limulus polyphemus (Atlantic horseshoe crab): 106478171
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Entry
106478171 CDS
T08968
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lpol
Limulus polyphemus (Atlantic horseshoe crab)
Pathway
lpol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lpol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106478171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lpol03041
]
106478171
Enzymes [BR:
lpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106478171
Spliceosome [BR:
lpol03041
]
Complex C
Other components
Step II factors
106478171
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
ResIII
T2SSE
AAA_14
AAA_7
SRP54
Sigma54_activ_2
AAA_30
AAA_16
DUF3663
cobW
ABC_tran
Motif
Other DBs
NCBI-GeneID:
106478171
NCBI-ProteinID:
XP_022237404
EnsemblRapid:
LOC106478171
LinkDB
All DBs
Position
Unknown
AA seq
1241 aa
AA seq
DB search
MHKQTEEEVQLNDRGKSIQISIYEMNLDHQSIHRLEGIQEEVGGLVIKKPKSQAGENVVF
KPPHPKKSLLGLDVLAAQKRKEKEFNEVEEMKRSKVSSYQNDWDEDEDVEEDDDKHSKEK
THARHYRGSRVETPSYTGGVSNEFKERLYERQDRDRERGVYASSSKSKDKERTKERDYRR
SKDKSSRRSERSRDRDKSERYSEYSSRRSHKDWEETPRRREEPSTPQIRPKDTPSRCNWE
EDDDSTPSKHSSWDLPTPSSRSGRSNKSERSVLSERKNKKYHSDTPLPTPAYKYNAWAAD
RKKTGATPRTLEDAGKTNMPWASEEDRFAWEEEQKRLDREWYSIDEGYDETHNPFGGMSS
EYTKRKEEALEKKKXKRMSAQQRQINKDNEKWETNRMLTSGVVQKLEFDEDFEEDNEARV
HLLVHNLVPPFLDGRIVFTKQPEPIIPVKDPTSDMAIVSRKGSAIVKHFREQKERRKAQK
KEWELAGTKLGDIMGIKKEDEKSKEVNEDGDTDYKADHRFAKHMQEKDEASSEFAKKKSI
LQQRQYLPVFAVRQELLTIVRDNSVVIIVGETGSGKTTQLTQYLHEEGYSKYGMVGCTQP
RRVAAMSVAKRVSDEMSVNLGDQVGYAIRFEDCTSEKTLIKYMTDGILLRESLREPDLDN
YSAIIMDEAHERSLNTDVLFGLLREVVARRKDLKLIVTSATMDASKFASFFGNVPVFTIP
GRTFPVEIYFSKNPVEDYVDAAVKQALQIHLQPSIGDILIFMPGQEDIEVTCELISERLG
EIDDAPQLAILPIYSQLPSDLQAKIFQKAPDGVRKCVVATNIAETSLTVDGIMFVIDSGY
CKLKVYNPRIGMDALQVYPISQANANQRSGRAGRTGPGHCFRLYTESQYKQELLVTTVPE
IQRTNLSNVVLLLKSLGVQKLLQFHFMDPPPEDNMLNSMYQLWILGALDNVGNLTPLGRN
MVEFPLDPALSKMLIVSCEMGCSSEILIIVSMLSVPAIFYRPKGREEESDAAREKFQVPE
SDHLTFLNVYQQWSNNSYSSSWCNEHFIHVKAMKKVREVRQQLKEIMVQQKMDIVSCGSE
WDVIRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGFTPDYIVYHELVMT
AKEYMQCVTAVDGHWLAELGPMFYAVKESGKSRLEGKRAAKENLSQMEEEMVIAEEQLKR
RKEEQEAKNQFSSRRSNILTPGRREPGTPVTPRRTPARFGL
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgcataaacaaactgaagaggaagtccaactaaatgatagaggaaaaagtattcaaata
tctatatatgagatgaaccttgatcatcaatccattcatcgtttagaaggtattcaggaa
gaagttggaggattagtaattaaaaaaccaaaatcacaagcgggtgaaaatgttgtattt
aaaccaccacatcctaaaaaatctcttcttggtctggatgtcctggcagctcaaaagaga
aaagaaaaagaattcaatgaagtagaagaaatgaaacgctcaaaagtttcatcatatcag
aatgactgggatgaagatgaagatgttgaagaggatgatgataaacattctaaagaaaaa
actcatgcaaggcactaccgaggatcaagagtagagacaccctcttatacaggtggtgtc
agcaatgaatttaaggagcgactgtatgagcgacaagacagagatcgggaacgtggagtc
tatgcttctagttctaaatccaaagacaaagaaagaacgaaggagagagattatagaaga
agtaaagacaaaagttctcgtcgaagtgaaagaagtagggacagagacaaatcagaacga
tattctgaatattcaagcaggcgttcccacaaagactgggaagagacaccacggcgaaga
gaggaaccttcaacaccacaaatcaggccaaaagatactccatctaggtgtaattgggaa
gaagatgatgacagtactccatcaaaacattcttcatgggatcttccaactccttcctct
cgctctggcagaagtaacaaaagtgagcgtagtgtcctttcagaaagaaaaaacaagaaa
taccacagtgatacacctctacccaccccagcctacaagtacaatgcttgggctgctgat
cgtaaaaaaactggagcaacaccgaggactttagaagatgctggcaaaacaaacatgcca
tgggcctcagaggaggatcgttttgcttgggaggaagaacaaaaacgtttggatcgagaa
tggtattccattgatgaaggttatgatgagacacacaatccatttggaggaatgtcctca
gaatatacaaaaaggaaagaagaagctcttgaaaaaaaaaagntgaagcgcatgtcagca
cagcaaagacagattaataaggataatgaaaaatgggagactaatcgaatgttaaccagt
ggagttgttcaaaaacttgagtttgatgaagactttgaagaggataatgaagccagagtc
catttacttgtccataacctggtgcctccatttcttgatggacgtattgtatttacaaaa
caaccagaaccaataattcctgtcaaggatcctacttctgacatggctattgtttcaaga
aagggaagtgcaatcgtaaagcactttcgggaacaaaaggagcgtcgtaaagcccagaag
aaagaatgggaactagctggaacaaaacttggtgacattatgggtatcaaaaaagaagac
gaaaagagtaaagaagtaaatgaagatggtgacacagattataaagctgatcatagattt
gccaagcacatgcaagaaaaggatgaagcttcaagtgagtttgctaagaagaagtccatt
ttacaacaacgccagtacttgccagtatttgctgttcgtcaggagctgctgactattgtt
agagacaacagtgttgtcataattgttggagaaactggttcagggaaaacaacgcagttg
acacaatatctccacgaagaaggctacagtaaatatggcatggtgggatgcacccaacct
cgacgtgttgctgctatgtcagtagcaaagcgtgtttctgatgaaatgagtgtgaatttg
ggagatcaagtgggatatgccattcgatttgaagattgcacgtcagagaaaactttgatc
aagtacatgactgatggtattttactacgagagtctttaagggaacctgatctagacaat
tatagtgctataataatggatgaagctcatgaacgttctctaaacacagatgttttgttt
ggactgctaagagaggttgtggctagaagaaaagatttgaaacttattgttacctcagca
acaatggatgcttcaaagtttgcctctttctttggtaatgtcccagtttttacaattcca
ggacgaacatttcctgttgagatttatttcagtaaaaaccctgttgaagactatgttgat
gctgctgtcaagcaagcattacagattcacttacaacccagtattggggatatcctaatt
ttcatgcctggacaagaagatattgaagttacttgtgaattgatatcagagaggctaggt
gaaatagacgatgctccccaattggctattcttccgatctattctcagttgccaagtgac
cttcaagcgaagatctttcaaaaggctcctgatggagttcgaaagtgtgtggtagccaca
aacattgcagaaacatctttaacagtggatgggatcatgtttgtcattgacagtggttac
tgtaagttaaaggtatacaatccaagaataggtatggatgccttacaagtgtacccaatt
agtcaggctaatgcaaatcaaagatctggaagagctggtaggacagggcctggtcactgt
ttccggctttacacagaaagtcagtacaagcaggaattgctggtgacaactgtgccagag
atccagaggaccaacttgtcaaatgtagttttgctcctcaagtctctgggagtccagaaa
ctattacagtttcatttcatggatcctccaccagaggataatatgcttaactccatgtac
caattgtggatcttgggtgcattggacaatgtgggtaaccttactccacttggacgtaac
atggttgaatttcctcttgatcctgcactgtcaaagatgctcattgtttcctgtgaaatg
gggtgtagttctgaaattctgattatcgtttccatgctgtcagtaccggcaatattttac
agacctaaaggacgagaggaagagagtgatgctgcaagagaaaaatttcaggtcccagaa
agtgatcatttaacatttttaaatgtttatcaacagtggagtaacaacagctactcatca
tcgtggtgtaatgaacacttcattcatgtaaaggctatgaaaaaagttcgagaagttcgg
caacagctgaaagagatcatggttcagcagaaaatggacattgtgtcgtgtggaagtgag
tgggatgttatacggaaatgtatctgttcagcatacttccatcaagctgctcgcctcaag
ggaattggagagtatgtaaactgtcgtacaggaatgccatgccatcttcatcctacaagt
gccctttttggcatgggcttcacaccagactacatagtctatcacgaacttgtaatgaca
gcaaaggaatatatgcagtgtgtaacagcagttgatggtcattggttggcagagcttggg
cccatgttctatgctgtcaaggaatcaggaaagtctcgattggaaggaaagcgtgcggca
aaagaaaatctatctcagatggaagaagagatggtcattgcagaggagcagttgaagaga
cggaaagaagaacaagaagctaaaaatcagttttctagtagaagaagtaatattttaaca
ccaggacggagagaaccaggaactccagtcactcccagaagaactcctgctaggtttgga
ttgtga
DBGET
integrated database retrieval system
