Legionella pneumophila Paris (serogroup 1): lpp1016
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Entry
lpp1016 CDS
T00209
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpp
Legionella pneumophila Paris (serogroup 1)
Pathway
lpp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
lpp1016 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpp03400
]
lpp1016 (mfd)
Enzymes [BR:
lpp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lpp1016 (mfd)
DNA repair and recombination proteins [BR:
lpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
lpp1016 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
DUF1474
Helicase_C_2
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAH12167
Pasteur:
lpp1016
LinkDB
All DBs
Position
complement(1129415..1132876)
Genome browser
AA seq
1153 aa
AA seq
DB search
MNTKTLLYQPTKNKQIWGQLYGSSLALALAEYCQQTPGIKLLITQDNLCASQLQDELQFF
LNPNQNTQELLFFPDWETLPYDQFSPHQDIISERLYTLSRVQQITNGIIISSASTLMHRL
SPPEFLNQYALMLKEGQKLDLNSFRNQLQQAGYHCVNKVLEHGEYALRGSIIDVYPMGSG
LPFRIELFDDEIESLREFDPETQRTIEKINQIHLLPAREFPLNEQSQLHFRRAFRESFPG
NPSHCPIYEAISNSQFPSGIEYYLPLFFDKTVTFFDYLPANAKICLIEETQENAERFWRE
LNERYEQRRHDVSRPILTPDNCFINPTELLTKANNYEQVRLYHKPSEKKGALNFNIAKAP
QLPIDRKNIEPLRQLSEYCSDPTRRYLIVVESAGRREVLLDLLKSSHIIPRTQNSWLDFI
YDESPINITTGPLIYGCELTDKQIVIIVESQLFGEQSTPQRRSTQKSVDPDLIIRDMAEL
RLGAPVVHLQFGVGRYQGLQYIDSNGTPSEFLVLAYAGDDKIYVPVTSLHMISRYTGVDS
EHAPLHKLGSDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYDFNQSEYIKFASGF
PFTETPDQLQAIEQIIRDMQSPRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAP
TTLLAGQHFESFRDRFAEFPVNIELLSRFRSNKESEAVLAALQSGKVDIVIGTHKLFQNN
ISFKNLGLLIIDEEHRFGVKQKEHIKSLRTHVDILSMTATPIPRTLNMAMAGIRDISLIA
TPPAKRLAIKTFWQEKNDLTIREAILREILRGGQVFYLHNNVQTIERVCQDLEALVPEAK
IQSAHGQMRERQLERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTPDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMHQGPEIDLRISAIIPEDYI
GDIHNRLIMYKRIANAKTTQQLRELQIELIDRFGLLPQPVKHLFLITELKLKAAQLGIQK
ISASAQQGKLDFSEKPSIDPGTLISLIQVHAKRYQMEGPQRLRFTLDSTSAEERIFEISS
LLNKLSPHSQTID
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaaacgctactttaccaacccacaaaaaataaacaaatatgggggcaactc
tatggtagcagtctggcacttgctttagccgaatattgccaacaaacacccgggatcaaa
ttacttattacgcaagacaacctatgcgccagtcagttgcaggatgaactacaatttttt
ctaaacccgaaccaaaatacccaggagttattattttttcccgactgggaaaccttgcct
tatgatcaattctctcctcatcaagatattatttcagaaagactctacaccttaagcaga
gttcaacaaattaccaatggaatcattatttcttcagccagcactttaatgcacagactt
tctccgccagagtttttaaatcaatacgctttaatgcttaaagaggggcaaaagcttgat
ctgaactcgttcaggaatcagttgcaacaagcaggataccattgtgttaataaagtgctt
gaacatggtgaatacgcactacgtggatctattattgacgtgtatccgatgggtagtggt
ttacctttccgtatcgagctatttgatgatgaaattgaaagtctcagagaatttgatccg
gaaacacaacgcacaatagaaaaaatcaatcaaatccatttgttacctgctcgtgaattt
ccattaaatgaacaaagccaattacacttccgacgagctttcagagagtcttttcctgga
aatcccagccattgcccaatatacgaagcaattagtaacagtcaatttccatctggcata
gaatattatctgcccttgttttttgataaaaccgttaccttttttgattatctgccagcc
aatgccaaaatttgtttaattgaagaaacccaagagaatgctgagagattctggcgagaa
ttaaatgaacgctatgaacaacggcgtcatgatgtcagccgccctattttaaccccagat
aactgctttattaatcccaccgaattattaactaaagctaacaattatgaacaagtacgc
ctgtatcataagccttccgaaaaaaaaggagccttaaatttcaatattgccaaagctcca
caactccccattgacaggaaaaatattgagccactccgccaattaagtgagtattgttct
gacccaacgcgacgctatcttattgttgttgaaagcgctgggcgtcgcgaagtattactg
gatctgcttaaatcaagccatatcattccaagaacacaaaactcgtggttggacttcatt
tacgatgaatcccccatcaatataactactggcccattgatttatggctgtgaattaacc
gacaaacaaattgtgatcatcgttgagtcgcaattatttggtgaacaaagcacacctcaa
cgccgaagcactcaaaaatcagttgatcccgacttaatcatacgagatatggccgaactt
cgattgggcgctcctgttgtacatcttcaatttggagtaggtcgctatcaaggtttgcaa
tacatcgactccaatggtacccccagtgagttcctcgtccttgcttatgcaggggatgac
aaaatctatgtcccagtcacttctctgcatatgataagccggtatactggtgtggacagt
gaacacgcccctttgcataaactgggttctgatcaatggcaaaaggaaaaaaagaaagcg
gccgagaagattcatgatgttgcaattgagttattggatctctatgctaaaagagaagcc
cagccagggcaccaatacgatttcaatcaatccgaatatataaaattcgccagtggcttc
ccctttacagaaacaccagatcaacttcaggctattgaacaaattattagggacatgcaa
tcaccaagaccgatggatcgcctaatctgtggtgatgtaggatttggcaaaacagaagtc
gccatgcgtgctgcattcgtagcagtacaaaatggaaaacaagtctgtatccttgctcca
actaccttgcttgcaggacaacattttgagtcatttcgcgatagatttgcagagtttcct
gttaatattgaattattatcccgctttcgcagtaataaagagtccgaagcagtccttgcc
gcattgcaatcaggtaaagtagatattgtgattggaacccataaattattccaaaataat
atttctttcaaaaacctgggattactgattattgatgaagaacatcgatttggagtgaaa
caaaaggaacatattaaatcgcttcgtactcatgttgatattttatccatgactgctact
ccaattcccagaaccttgaacatggcaatggcgggaatcagagatatttcacttattgca
acaccgcccgccaagcgtttggcgattaaaacattttggcaagaaaaaaatgatctcacc
atacgagaagcgatattgcgcgaaatattaaggggagggcaagtattttacctgcacaat
aatgtacaaactatagaaagagtttgccaggatctggaagctttagtgcccgaagcaaaa
attcaaagcgcacatgggcaaatgcgagaaaggcaattagagcgcatcatgtctgatttt
tatcatcaccgatttaatgtcctggtttgcacaaccatcattgaaacagggatcgatatt
ccaacggccaataccattattatcgatcgtgccgataaatttggattagcccagctgcat
caattacgtggtcgtgttggacgctctcatcatcaagcctacgcttacttattaactccc
aatgaaaaactgttaacgccagatgcagtgaaacgtctcgaagccattgtgtctttagaa
gatttgggagcagggttcaccttggcaacacacgatctggaaattcgtggagcaggtgaa
ctccttggtgaagaacaaagtggtaatatgcatgccataggatttaatttatttatggaa
atgcttgaccgtgccgttaacgatttaaaggcaggtaaaactcctgaattgtcagcacca
atgcatcaaggacctgaaattgacttgagaattagcgcgattatccccgaagattacata
ggtgatatacacaatagactcatcatgtataaaagaattgctaatgcaaaaactacccaa
caacttagagaactacaaatagaactgatagaccggtttggtttactcccacaacctgtc
aaacatctgtttttgattactgaattaaagttaaaagcagcacagctcggtattcaaaaa
atcagtgccagtgctcaacaaggtaaattggattttagtgaaaaaccatcgattgaccct
ggaacactgattagcttaatacaagtacatgccaaacgctatcaaatggaaggaccgcaa
cgtctgcgttttactctagacagcacgtcagcagaggaacgaatatttgaaatcagttct
ttattaaataaactgtctcctcattcccaaacgattgactga
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integrated database retrieval system
