Lactiplantibacillus plantarum ST-III: LPST_C1720
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Entry
LPST_C1720 CDS
T01324
Symbol
recJ
Name
(GenBank) single-strand DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lps
Lactiplantibacillus plantarum ST-III
Pathway
lps03410
Base excision repair
lps03430
Mismatch repair
lps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPST_C1720 (recJ)
03430 Mismatch repair
LPST_C1720 (recJ)
03440 Homologous recombination
LPST_C1720 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lps03400
]
LPST_C1720 (recJ)
DNA repair and recombination proteins [BR:
lps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LPST_C1720 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LPST_C1720 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPST_C1720 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADN98936
LinkDB
All DBs
Position
complement(1846634..1848970)
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AA seq
778 aa
AA seq
DB search
MLAAKKKWVPRLTTAVDEADVDKLAEAASVTPLVARLLIMRGINTAEEAAPFLHADQQPL
LDPTTMHDMEKAVDRIQEAIIAGDQITIYGDYDADGLTSTSIMYETLDQIGANVNYYIPD
RFKDGYGPNQAAFDRLIAAGTKLFVTVDNGVAGNAVINQVQEQGIDVVVTDHHELPTELP
HAYAIVHPRHPEGSYPFGGLSGAGVAFKVATALLEEVPEELLDLAAIGTVADLVSLTGEN
RTLVTLGLKVLQQTTRPGLAALIQEAGLIPDKLTETNIGFGIAPRLNALGRLQSAQSGVE
LLTTLDDERATALAKQVNQLNEKRQGLVKTISASAIEQAQTPENEARQTLVITGHGWHEG
VLGIVASHVVETSGKPTLVLNEDDDGRLKGSGRSVEAYNLFAAIDPVRESLVAFGGHHMA
VGLTVMADQLATLKEAMEAAAVSQQLADNAQVSLPIDGTLPLAEATLATLADIQALAPFG
TDNPAPLFELVPTTVPQARAIGSDQQHLKLQLGDGTNTIDAIGFSMGTALPAIQASPTDV
TLVGELSENTWNGQTKPQIMVKDIAVTGTQVIDARTQHLSAHLFQAPGVYLFFHQRLLKK
VEQYLGSQAQAVWVGDTKTDLTAVTANQAVFIVDCPDTLADMTQVLSTIALDQLTLYLYR
QESVYLTGMPNRAQFAKLFQFTAAHHDVDIHHQLTLVAKHLHIERNLLIFMIQVFFEVGF
VKINDGVMNGVSNPAKADLHHAPSYQLREQQIVAEETLLYSKSAALQVWVKNQAAVKN
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgttagcggcaaagaaaaagtgggtgccacgtttaacaacggccgttgatgaagccgat
gttgataagttagctgaggcggccagcgtgacccccttagttgcccggttattaataatg
cggggcattaatacggcggaagaagccgctccattcctgcacgcagatcaacaaccattg
ttggatccaacgaccatgcacgatatggaaaaagccgttgaccgcattcaagaggcgatt
attgccggggatcaaattaccatttacggtgattatgatgcagatggtttaacaagtacg
tcaattatgtatgaaacgttggaccaaattggcgctaacgtgaattactatattccagat
cgtttcaaggatggttatgggcctaatcaggctgcttttgaccggctgattgcggctgga
acgaagctgtttgtgacggtggacaacggtgtcgcgggaaatgcggtcatcaatcaagtg
caggaacagggcatcgatgtcgtggtgaccgatcatcatgagttaccgactgaattgccg
cacgcttacgccattgtccatccacgacatccagagggcagttatccatttggtggtctt
tctggtgccggtgtggcgtttaaagtagcaacggcgctgcttgaggaagtacccgaggaa
ctgttagatctggctgctattggaacggttgctgatttggtcagcttaactggtgaaaat
cggactttggtaacgctcggcctgaaggtcttacagcagacgacccgcccaggcttggcc
gcactgattcaagaagccggattgattcccgataaattgaccgagaccaatatcgggttt
ggtattgcccctcggctaaacgcacttggccgtctgcagtcggcgcagagcggtgtagaa
ttattgacaactttggacgatgagcgggcgaccgcgctggccaagcaggtcaatcaattg
aatgaaaaacgccaaggcttggtcaagacaatcagtgccagtgcaatcgagcaagcacag
acgccggaaaatgaggcccgccaaaccttagttattaccgggcatggttggcacgagggt
gttttgggaatcgtcgcgagccacgtggtcgaaacgtctggcaaaccaaccctagtgtta
aatgaggatgatgatggccggctcaaaggtagtggtcggagcgttgaagcgtataattta
tttgccgcaatcgacccagttcgtgagtcattggtggcttttggcggtcatcatatggcg
gttggactaactgtcatggccgaccagttagcaacgcttaaagaggcgatggaagcggcg
gcggttagtcagcaattagcagacaatgcgcaagtcagtttaccaattgacggcacgtta
ccattagctgaggcaaccttggcaactctggcagatattcaagcgttggccccctttgga
acggataacccggcaccgttgtttgaattagttccaacgactgttccgcaagcacgcgcg
attggtagtgatcagcaacacttgaaattacaactgggtgatggcaccaatacgattgat
gctatcggtttttcgatgggtactgccttgccggctattcaggcgagtcccaccgatgtg
acgttagtgggtgagttgagtgaaaatacttggaacggtcagacaaagccccaaatcatg
gttaaggatattgcagtgacggggacccaggtgatcgacgcccggacgcaacatctttcg
gcccatttgtttcaagcaccgggggtttacctctttttccaccagcgtctgttgaaaaaa
gttgaacagtatttaggttcccaagcgcaagccgtatgggtgggggatacgaaaacggat
ctgactgccgtgacggctaatcaagcggtcttcattgtcgattgtcctgacacgctggcg
gatatgacccaggtactcagcacaattgcgctcgatcagctgacgctctacttatatcgg
caagaatcggtttatttaacgggaatgccaaatcgcgcgcagtttgcgaaacttttccag
tttaccgcagcgcaccatgatgttgatattcatcatcaattaacattagtggccaagcat
ctgcatattgaacgaaatttgcttattttcatgattcaggtgttttttgaggtcggattt
gttaaaataaatgatggtgtcatgaatggcgtttcgaatccggcaaaagcggatttacat
cacgcccctagttatcagctgcgcgaacaacaaatcgttgctgaagaaacgcttttatat
agtaaatctgcagcgctccaagtatgggtgaagaaccaggctgcggttaagaattga
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