Lactobacillus paragasseri: LpgJCM5343_02260
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Entry
LpgJCM5343_02260 CDS
T05840
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LpgJCM5343_02260 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpw03021
]
LpgJCM5343_02260 (rpoE)
03400 DNA repair and recombination proteins [BR:
lpw03400
]
LpgJCM5343_02260 (rpoE)
Transcription machinery [BR:
lpw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LpgJCM5343_02260 (rpoE)
DNA repair and recombination proteins [BR:
lpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LpgJCM5343_02260 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
Motif
Other DBs
NCBI-ProteinID:
BBD47873
LinkDB
All DBs
Position
265944..266486
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AA seq
180 aa
AA seq
DB search
MGLDDFKGQNKDELSMIEVARAILQDSGKRMAFADIVNAVQNFLGKSDEEIRERLPQFYT
DMNTDGEFISMGDNVWALRSWFPYESVDEEVNHPEDEDDVPRKKHHKKVNAFIGDSDDDD
IIDYDSDDPEDEDLDVDDDDNNEDDYSDDDLDDADDNELDDGIEGQLSELHQDDLDDDDD
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
gtggggttagatgattttaaaggccaaaataaagacgaattgtcaatgatcgaagttgct
cgtgcaattttacaagatagcggcaagcgaatggcctttgctgatatcgttaacgccgtc
cagaactttctgggtaagagtgacgaagaaattcgtgagcgtttgccacaattttacact
gatatgaacactgatggtgaattcatttcaatgggtgataatgtttgggcattgcgttct
tggttcccatatgaatctgttgatgaagaagtaaaccatccagaagatgaagatgatgtg
ccacgtaagaagcaccacaagaaggttaatgcctttattggtgattctgacgatgatgac
attattgactatgattcagatgatccagaagatgaagatttggacgttgatgacgacgac
aataatgaagatgattactcagatgatgatcttgacgatgctgacgacaatgaattagat
gacggtatcgaaggacaattatcagaacttcatcaagatgatcttgatgacgatgacgat
taa
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