Luteibacter pinisoli: FIV34_20175
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Entry
FIV34_20175 CDS
T06035
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lpy
Luteibacter pinisoli
Pathway
lpy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FIV34_20175 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpy03400
]
FIV34_20175 (ligD)
Enzymes [BR:
lpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FIV34_20175 (ligD)
DNA repair and recombination proteins [BR:
lpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FIV34_20175 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QDE41346
UniProt:
A0A4Y5Z8Q6
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All DBs
Position
4448748..4451273
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AA seq
841 aa
AA seq
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MSLQDYRKKRDFSRTREPAPERSARAGRAIFVVQLHHASRRHFDFRLQVGDVLRSWAVPK
GPSYDPKVKRLAVEVEDHPVSYADFEGDIEHGYGKGHVDTFDRGVWSTAGDVEAQLAKGH
LSFELFGERLKGAWHLVRSGKKERQPAWFLIKAEDAYASDVEADDLLDNTMRESTRRAAK
TPATKAAAKKSTASRRAVPKGRRVPLATLTKAAAAIKGVKKGKPSADYFAPQLAKLRDTP
PQGELWLHEVKWDGYRILAGVAKGAVSLWSRNALPWNDRLPEIVQAVEALGLDSARLDGE
LIAVDAQGRSDFNALQKTLAGEAQAPLVYMLFDMPFLQGYDLSRTALAERKALLERVLAH
APSHLGYSGHNLGDGDAVFAMAMKEKLEGIVSKRVDGAYHSGRNDDWLKIKRLEADEFAV
VGYTAAKGSRVAFGSLLLAKPGTRGRWTYVGRVGTGFTDEMLRELGASLAKGGAKTPPVP
LDGIDPLLRGALWVKPTVVAEVYYRGIGNHQLLRQPSLKALRIDKAPNDLRDSDRATEPA
KPARKKTVAKDEITITHPDRVVYPDDGVTKQDVADYYKAVMPWFLPPVADRPMPMLRCPG
GIGEHCFFQKHVIAGLHHVGTAKLKEETGAQAVYLYPKDEAGLLELVQFGAIEFHPWGSH
VKTPDAADRVIFDLDPGDNVAWKRVVAAARMVRDFLKQLGLTSFVRTTGGKGLHVVVPLA
PAADWDTVRSFARGFAEALAQAHPLEFVATAAKKVRGGKIYLDYLRNGRGATAVASYSLR
ARAGAPVAVPVRWEDLGKLKSGADFTIHTVPKRLARQKKDPWDGIDAVQQSLDDVVERLG
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcaggactaccggaagaagcgcgacttcagccgcacccgcgagccggcgccg
gaacgctcggcgcgcgccggccgggcgatcttcgtggtgcagctgcatcacgcctcgcgg
cgacacttcgatttccgcctgcaggtgggcgatgtactgcgcagctgggcggtaccgaaa
ggcccaagctacgacccgaaggtgaagcgcctggccgtggaggtcgaagaccacccggtg
tcctatgcagactttgaaggcgacatcgagcacggctacggcaagggccacgtcgatacc
ttcgatcgcggcgtgtggtcgaccgcgggcgatgtggaggcgcagctcgccaagggccac
ctgagctttgaactgttcggggaacgcctgaaaggtgcctggcacctggtccgcagcggg
aagaaggaacgccagcccgcctggttcctgatcaaggccgaggatgcctacgccagcgac
gtggaagccgacgacctcctggataacaccatgcgcgaaagcactcgccgcgccgcgaag
acgccggcaacgaaggcggcagcgaagaaaagcaccgccagcaggagggccgtaccgaag
ggccgccgcgtccccctcgccacgctgaccaaggcggccgccgccatcaagggcgtgaag
aagggcaagcccagcgccgattacttcgcgccgcagctggcgaagctgcgcgacaccccg
ccacaaggcgagctgtggctgcacgaggtgaagtgggatggctaccgtatcctcgctggc
gtggccaagggcgccgtgagcctgtggtcgcgcaatgccctgccgtggaacgaccgcctg
cccgagatcgtccaggccgtggaagcactcgggctcgatagcgcccggctcgacggcgag
ctgatcgccgtcgatgcgcagggccgcagcgacttcaacgccctgcagaaaacgcttgcc
ggcgaagcacaggcaccgctcgtctacatgctgttcgacatgcccttcctgcaaggctat
gacctgtcgcgcacggcactggcggagcgcaaggcactactggaacgcgtgctcgcgcat
gcgccttcgcacctgggatacagcggccataacctcggcgatggcgatgccgtgttcgcg
atggccatgaaagagaaactcgaaggcatcgtctcgaaacgcgttgacggcgcgtaccac
agcgggcgcaacgacgactggctgaagatcaagcgcctggaggccgacgagttcgccgtc
gtcggctacaccgcggccaagggctcgcgcgtggccttcggctcgctgctgctcgcaaag
ccaggcacgaggggtcgatggacctacgtcggccgcgtcggcacgggtttcaccgacgaa
atgctgcgcgaactgggcgcctccctggcgaaaggcggggcgaaaacaccaccggtgccg
cttgatggcatcgaccccctgctccgcggcgccctgtgggtgaagcccacggtggtggcc
gaggtgtattaccgcggcatcggcaaccaccagctgctgcgccagccgagcctgaaggcg
ctgcgcatcgacaaggcaccgaacgacctgcgcgacagcgaccgcgcgaccgagcccgcg
aagcctgcgaggaaaaagaccgtggcgaaggacgagatcaccatcacccaccccgaccgc
gtcgtctatcccgacgacggcgtcaccaagcaggacgtcgccgactactacaaggcggtg
atgccgtggttcctgccaccggtcgcggaccggccgatgccgatgctgcgctgtccgggt
ggcatcggtgagcactgcttcttccagaagcacgtgatcgccggcctgcaccatgtcggc
acggcaaagctgaaggaagaaaccggtgcgcaggctgtttacctgtatccgaaggacgaa
gccggcctgcttgagctggtgcagttcggtgccatcgagttccatccgtgggggtcgcat
gtgaaaacaccggacgccgcggaccgggtgatcttcgacctggacccgggcgacaacgtg
gcgtggaagcgcgtggtggctgccgcgcgcatggtccgcgacttcctcaagcagctgggc
ctcacctcgttcgtgcgcaccacgggcggcaagggcctgcacgtggtggtgccgctggcg
cccgccgcagactgggacaccgtgcgcagctttgcgcgcggctttgccgaggccctggcc
caggcgcacccgctggagttcgtcgccacggcggcgaagaaagtgcgtggcggcaagatc
tacctcgactacctgcgcaacggccgcggcgccacggcggtggcctcgtactcgctgcgc
gcccgcgccggcgcaccggtggccgtgcccgtgcgctgggaagacctgggcaaactgaag
tcgggcgcggacttcaccatccacaccgtgcccaaacgcctggcccggcagaagaaggat
ccctgggacggcatcgacgcagtgcagcaaagcctggatgacgtggtggaacggctgggc
ctgtag
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