KEGG   Luteibacter pinisoli: FIV34_20175
Entry
FIV34_20175       CDS       T06035                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lpy  Luteibacter pinisoli
Pathway
lpy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lpy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FIV34_20175 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lpy03400]
    FIV34_20175 (ligD)
Enzymes [BR:lpy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FIV34_20175 (ligD)
DNA repair and recombination proteins [BR:lpy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FIV34_20175 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QDE41346
UniProt: A0A4Y5Z8Q6
LinkDB
Position
4448748..4451273
AA seq 841 aa
MSLQDYRKKRDFSRTREPAPERSARAGRAIFVVQLHHASRRHFDFRLQVGDVLRSWAVPK
GPSYDPKVKRLAVEVEDHPVSYADFEGDIEHGYGKGHVDTFDRGVWSTAGDVEAQLAKGH
LSFELFGERLKGAWHLVRSGKKERQPAWFLIKAEDAYASDVEADDLLDNTMRESTRRAAK
TPATKAAAKKSTASRRAVPKGRRVPLATLTKAAAAIKGVKKGKPSADYFAPQLAKLRDTP
PQGELWLHEVKWDGYRILAGVAKGAVSLWSRNALPWNDRLPEIVQAVEALGLDSARLDGE
LIAVDAQGRSDFNALQKTLAGEAQAPLVYMLFDMPFLQGYDLSRTALAERKALLERVLAH
APSHLGYSGHNLGDGDAVFAMAMKEKLEGIVSKRVDGAYHSGRNDDWLKIKRLEADEFAV
VGYTAAKGSRVAFGSLLLAKPGTRGRWTYVGRVGTGFTDEMLRELGASLAKGGAKTPPVP
LDGIDPLLRGALWVKPTVVAEVYYRGIGNHQLLRQPSLKALRIDKAPNDLRDSDRATEPA
KPARKKTVAKDEITITHPDRVVYPDDGVTKQDVADYYKAVMPWFLPPVADRPMPMLRCPG
GIGEHCFFQKHVIAGLHHVGTAKLKEETGAQAVYLYPKDEAGLLELVQFGAIEFHPWGSH
VKTPDAADRVIFDLDPGDNVAWKRVVAAARMVRDFLKQLGLTSFVRTTGGKGLHVVVPLA
PAADWDTVRSFARGFAEALAQAHPLEFVATAAKKVRGGKIYLDYLRNGRGATAVASYSLR
ARAGAPVAVPVRWEDLGKLKSGADFTIHTVPKRLARQKKDPWDGIDAVQQSLDDVVERLG
L
NT seq 2526 nt   +upstreamnt  +downstreamnt
atgagcctgcaggactaccggaagaagcgcgacttcagccgcacccgcgagccggcgccg
gaacgctcggcgcgcgccggccgggcgatcttcgtggtgcagctgcatcacgcctcgcgg
cgacacttcgatttccgcctgcaggtgggcgatgtactgcgcagctgggcggtaccgaaa
ggcccaagctacgacccgaaggtgaagcgcctggccgtggaggtcgaagaccacccggtg
tcctatgcagactttgaaggcgacatcgagcacggctacggcaagggccacgtcgatacc
ttcgatcgcggcgtgtggtcgaccgcgggcgatgtggaggcgcagctcgccaagggccac
ctgagctttgaactgttcggggaacgcctgaaaggtgcctggcacctggtccgcagcggg
aagaaggaacgccagcccgcctggttcctgatcaaggccgaggatgcctacgccagcgac
gtggaagccgacgacctcctggataacaccatgcgcgaaagcactcgccgcgccgcgaag
acgccggcaacgaaggcggcagcgaagaaaagcaccgccagcaggagggccgtaccgaag
ggccgccgcgtccccctcgccacgctgaccaaggcggccgccgccatcaagggcgtgaag
aagggcaagcccagcgccgattacttcgcgccgcagctggcgaagctgcgcgacaccccg
ccacaaggcgagctgtggctgcacgaggtgaagtgggatggctaccgtatcctcgctggc
gtggccaagggcgccgtgagcctgtggtcgcgcaatgccctgccgtggaacgaccgcctg
cccgagatcgtccaggccgtggaagcactcgggctcgatagcgcccggctcgacggcgag
ctgatcgccgtcgatgcgcagggccgcagcgacttcaacgccctgcagaaaacgcttgcc
ggcgaagcacaggcaccgctcgtctacatgctgttcgacatgcccttcctgcaaggctat
gacctgtcgcgcacggcactggcggagcgcaaggcactactggaacgcgtgctcgcgcat
gcgccttcgcacctgggatacagcggccataacctcggcgatggcgatgccgtgttcgcg
atggccatgaaagagaaactcgaaggcatcgtctcgaaacgcgttgacggcgcgtaccac
agcgggcgcaacgacgactggctgaagatcaagcgcctggaggccgacgagttcgccgtc
gtcggctacaccgcggccaagggctcgcgcgtggccttcggctcgctgctgctcgcaaag
ccaggcacgaggggtcgatggacctacgtcggccgcgtcggcacgggtttcaccgacgaa
atgctgcgcgaactgggcgcctccctggcgaaaggcggggcgaaaacaccaccggtgccg
cttgatggcatcgaccccctgctccgcggcgccctgtgggtgaagcccacggtggtggcc
gaggtgtattaccgcggcatcggcaaccaccagctgctgcgccagccgagcctgaaggcg
ctgcgcatcgacaaggcaccgaacgacctgcgcgacagcgaccgcgcgaccgagcccgcg
aagcctgcgaggaaaaagaccgtggcgaaggacgagatcaccatcacccaccccgaccgc
gtcgtctatcccgacgacggcgtcaccaagcaggacgtcgccgactactacaaggcggtg
atgccgtggttcctgccaccggtcgcggaccggccgatgccgatgctgcgctgtccgggt
ggcatcggtgagcactgcttcttccagaagcacgtgatcgccggcctgcaccatgtcggc
acggcaaagctgaaggaagaaaccggtgcgcaggctgtttacctgtatccgaaggacgaa
gccggcctgcttgagctggtgcagttcggtgccatcgagttccatccgtgggggtcgcat
gtgaaaacaccggacgccgcggaccgggtgatcttcgacctggacccgggcgacaacgtg
gcgtggaagcgcgtggtggctgccgcgcgcatggtccgcgacttcctcaagcagctgggc
ctcacctcgttcgtgcgcaccacgggcggcaagggcctgcacgtggtggtgccgctggcg
cccgccgcagactgggacaccgtgcgcagctttgcgcgcggctttgccgaggccctggcc
caggcgcacccgctggagttcgtcgccacggcggcgaagaaagtgcgtggcggcaagatc
tacctcgactacctgcgcaacggccgcggcgccacggcggtggcctcgtactcgctgcgc
gcccgcgccggcgcaccggtggccgtgcccgtgcgctgggaagacctgggcaaactgaag
tcgggcgcggacttcaccatccacaccgtgcccaaacgcctggcccggcagaagaaggat
ccctgggacggcatcgacgcagtgcagcaaagcctggatgacgtggtggaacggctgggc
ctgtag

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