Lolium rigidum (rigid ryegrass): 124654186
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Entry
124654186 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124654186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124654186
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124654186
Spliceosome [BR:
lrd03041
]
Complex A
U2 snRNP components
U2 related factors
124654186
Complex B
124654186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
124654186
NCBI-ProteinID:
XP_047049164
LinkDB
All DBs
Position
1:197175428..197178565
Genome browser
AA seq
1045 aa
AA seq
DB search
MSSGDEERAAVSKHHHRDKDKKRDHSSSSSRRHRDKDRSSSRHHRDERDGERERDRDPDR
HHGGKERDREERKAREQREKEEKKERERERRREERDREKEKEKSRRREAVDEEEDEDRDR
KRRRRSSRHHHHRDAEPEAAPLARAEEEEDDGEEAQMRRQKKKEEDMEAEQQQLDDEMER
RRRRVKEWQEKKRREQQLQDGSSGAAATADADGEGESGKKWTLDGEESDEEDANKLDEED
AKKSGENGGAGSGAMDVDTPNLLGNDGNSGADMEEDEIDPLDAFMNSMVLPEVAKLESAA
PAMEIVLVANAGGMDDKDDADKKAPVKGMGRIMQGDDSDSDYDDSDNNEAGSDDEDDAEF
MKRVKKTKAEKLVIVDHSKIDYQPFRKNFYIEVKDITRMSAEEVAAYRKLLEIKVHGKDV
PKPIKMWIQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLAFV
LPMLRHVKDQPPVVPGDGPIGLIMAPTRELVLQIYSDIKKFSKVLGINCVPIYGGSGVAQ
QISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVSFLVLDEADRMFDMGFEPQITRIV
QNTRPDRQTVLFSATFPRQVEILARKVLTKPVEVLMGGRSVVNKDITQLVEVRPDSERFF
RLLELLGEWFTKGKILVFVHSQEKCDSLLKELFQHGYPCLSLHGGKDQNDRESTLADFKS
NVCNLLIATSVAARGLDVKDLEIVVNYDVTNHYEDYVHRVGRTGRAGRKGCAVTFISEEE
ERYAPDLVKALELSEQAIPEDLKALADRFMSKVRQGTEQAHGTGYGGSGFKFNREEEEAR
QSARRAQGRAHGYEDNSDSGSEEEGGVHRQGDDVAAQSLAAAQAAALAVARAASIANQQA
TAAGSLLPLLVTPNQPNNDATERALDAARNLAQNLARIQGHAVPEHYDAELEINDFPQNA
RWKITHKDTLGPIQEWTGAAITTRGTFIPQGRIVGANERKLYLYIEGPNESSVKKAKAEL
KRVLEDCANHALNLPGSAQTGKYVV
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccggcgacgaagagcgcgccgccgtgtccaagcaccaccaccgggacaaggac
aagaagcgcgaccactcctcctcctcctcccgccgccaccgcgacaaggaccgctcctcc
tcccgccaccacagggacgagagggacggcgagcgggagcgggaccgagatcccgaccgc
caccacggtggcaaggagcgggatcgcgaggagcggaaggcgcgggagcagcgcgagaag
gaggagaagaaggagagggagcgggagcggcgtcgcgaggagcgcgacagggagaaggag
aaggagaagtcgaggcggcgggaggcggtcgacgaggaggaggacgaggaccgcgaccgc
aagcgccgccgccggtcctcgcgccaccaccaccaccgcgacgccgagccggaggcggcg
ccgctggccagggcggaggaagaggaggatgatggggaggaggcgcagatgcggcggcag
aagaagaaggaggaggacatggaggctgagcagcagcagctcgacgacgagatggagcgc
cgccgtcgccgcgttaaggagtggcaggagaagaaacgccgcgagcagcagctgcaggat
ggctccagcggtgctgctgccaccgctgatgctgatggtgaaggcgagtctgggaagaag
tggaccttggatggtgaggagtcggatgaggaggatgcaaataagttggatgaggaggat
gcgaagaagtcgggggagaatggtggcgctggcagcggtgccatggatgttgacacccct
aacctcctgggtaatgatggaaatagtggtgctgatatggaggaggatgagattgacccc
ctcgacgcgttcatgaactccatggtgttgccagaggttgcaaagctggagagtgccgcg
ccagccatggagattgtgcttgttgccaatgcaggaggcatggatgataaggatgatgca
gataagaaagcaccggtgaagggaatggggagaattatgcaaggggatgactctgactct
gattatgacgacagtgataacaacgaggctgggtcggatgacgaggatgatgcagagttc
atgaagcgtgtcaagaagacaaaggctgagaagttggttattgttgaccattccaagatt
gattaccagccattccgcaagaatttctatattgaggtgaaggatattacaaggatgtca
gctgaggaagtggcagcctaccggaagctcttggagatcaaggtgcatgggaaagacgtt
cccaagccaataaagatgtggatacagagtggtctgacaagtaagctacttgacaccatc
aagaagcttggtttcgagaaaccaatgcctatacaggcacaagcactaccaatcataatg
agtggacgcgattgtataggggttgcaaagactggttctggcaagactctagcgtttgtc
ttgccaatgctgaggcatgtcaaagaccaaccgcctgttgtgcctggggatggccctatt
gggctcatcatggctcctaccagagagctggtgctgcaaatatattctgatatcaaaaag
ttctctaaggtgcttggcatcaactgtgttcctatatatggaggttctggggttgctcag
cagatcagtgagctgaaaaggggtgctgaaattgttgtttgtacacctggcaggatgatt
gatatcctttgcactagcagtggcaagattaccaatcttagaagagtgtcgttcttggtg
ttggatgaagctgataggatgtttgatatgggtttcgaacctcagattactcgaatagtt
cagaacacccgtccagataggcagactgtccttttctctgccacttttccacgacaggtg
gagatactggcacgtaaggtgctgacaaagcctgttgaggttctgatgggtgggaggagt
gttgtgaacaaagatatcacacaactggttgaggtgcggccagacagtgaaaggttcttt
aggctgttggagttgcttggggagtggtttacaaagggaaaaattcttgtttttgtacac
tcgcaagaaaaatgcgattcactactgaaagagctgttccagcacggatacccatgttta
tctctgcatggtggaaaggatcaaaatgaccgagaatcaactcttgctgatttcaagagt
aatgtatgcaaccttctgatcgctaccagtgttgctgctcggggtttagatgtgaaagat
cttgagattgttgtcaattatgatgtcactaatcattatgaggactatgttcatcgtgtt
gggcgaacgggccgggctggtaggaagggctgtgctgtgacatttatctctgaggaagag
gaacgctatgcaccagaccttgttaaggctttagaactatctgaacaggccattccagag
gacctgaaagccttagcggatcgatttatgtcaaaggtgaggcagggaacagagcaggcc
catggaacaggatatggtggaagtggtttcaagttcaacagagaagaggaggaagcacga
caatccgcgagaagggctcagggaagagctcatggatacgaggacaattcagattcaggt
tccgaggaggaaggaggtgtacacagacagggagatgacgttgcagcacaatctcttgcc
gctgctcaagccgctgctctagctgtagccagggctgctagtattgccaaccagcaagca
acagctgcaggctccttgcttcctctactggttacacctaaccaaccaaacaatgatgcc
acagaacgtgcacttgatgctgcaaggaacttagcacaaaatctggcaaggatacagggc
catgcagttccagaacactatgatgctgagcttgagattaatgatttcccacaaaatgct
cgctggaagatcactcacaaagatacattgggtcctattcaggaatggactggagctgca
attactacaaggggaacctttattcctcaaggcagaattgttggtgctaacgagcgcaag
ctgtacctgtatattgagggtcccaacgaatcttcggtgaagaaggcaaaagcagaactg
aagcgtgtccttgaggattgtgcaaaccatgcgctcaatcttcctggttctgctcaaacc
ggaaagtacgttgtttga
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